Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0578
         (817 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26350.1 68416.m03287 expressed protein  ; expression support...    30   2.1  
At1g17440.2 68414.m02133 transcription initiation factor IID (TF...    30   2.1  
At1g17440.1 68414.m02132 transcription initiation factor IID (TF...    30   2.1  
At3g10070.1 68416.m01207 transcription initiation factor IID (TF...    29   3.7  
At4g32360.1 68417.m04607 NADP adrenodoxin-like ferredoxin reduct...    28   6.4  

>At3g26350.1 68416.m03287 expressed protein  ; expression supported
           by MPSS
          Length = 356

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 40  SGSPGLQEFG-TRQQSSQSQPHLPAV-HPADQRTRLWQPSP 156
           S +P L+  G +  Q+S +QPH+P + HP     +  QP P
Sbjct: 18  SQNPHLKSGGASTSQTSSNQPHIPPIPHPKKSHHKTTQPHP 58


>At1g17440.2 68414.m02133 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 85  SQSQPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTI 192
           + SQP++ + +P      +    PSPS LS+P+S++
Sbjct: 70  NNSQPNISSPNPTSSNPPIGAQIPSPSPLSHPSSSL 105


>At1g17440.1 68414.m02132 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 85  SQSQPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTI 192
           + SQP++ + +P      +    PSPS LS+P+S++
Sbjct: 70  NNSQPNISSPNPTSSNPPIGAQIPSPSPLSHPSSSL 105


>At3g10070.1 68416.m01207 transcription initiation factor IID
           (TFIID) subunit A family protein similar to hypothetical
           protein GB:CAB10099 [Schizosaccharomyces pombe];
           contains Pfam profile PF03847: Transcription initiation
           factor TFIID subunit A
          Length = 539

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 73  RQQSSQSQPHLPAVHPADQR-TRLWQPSPSPSVLSYPNSTIS 195
           RQ S+ SQP      P+D + + L Q  P+PS    P+S +S
Sbjct: 5   RQSSTASQPPETPPQPSDSKPSTLTQIQPTPSTNPSPSSVVS 46


>At4g32360.1 68417.m04607 NADP adrenodoxin-like ferredoxin reductase
           identical to NADP adrenodoxin-like ferredoxin reductase
           GI:28192433 from [Arabidopsis thaliana]
          Length = 483

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 383 LRSGISPEHESENVNIKNFAHMKIHWSC*FM 475
           +RSG++P+H    + I  F+ +  H  C F+
Sbjct: 62  VRSGVAPDHPETKIAINQFSRVAQHERCSFI 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,058,962
Number of Sequences: 28952
Number of extensions: 347622
Number of successful extensions: 784
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)