Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0576
         (589 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1XD36 Cluster: Vrille; n=3; Endopterygota|Rep: Vrille ...   100   3e-20
UniRef50_UPI00015B412D Cluster: PREDICTED: similar to vrille; n=...    43   0.006
UniRef50_UPI0000DB75B0 Cluster: PREDICTED: similar to vrille CG1...    38   0.23 
UniRef50_Q7Q3B8 Cluster: ENSANGP00000010250; n=2; Culicidae|Rep:...    37   0.30 
UniRef50_O18660 Cluster: BZIP transcription factor; n=5; Sophoph...    37   0.40 
UniRef50_A7TSY0 Cluster: Putative uncharacterized protein; n=1; ...    33   6.5  

>UniRef50_Q1XD36 Cluster: Vrille; n=3; Endopterygota|Rep: Vrille -
           Danaus plexippus (Monarch)
          Length = 364

 Score =  100 bits (239), Expect = 3e-20
 Identities = 58/89 (65%), Positives = 62/89 (69%), Gaps = 2/89 (2%)
 Frame = +2

Query: 308 MVAEFILSQQQLLSARAGAALWXXXXXXXXXXXXXXXLSVSPHFPMDQAPPSNGSSGDSH 487
           MVAEFILSQQQLL+A  G  L                LSVSPHFPM+Q PPS  S+GD  
Sbjct: 1   MVAEFILSQQQLLNAGGGPPLVPPPSPSRIAQPPRACLSVSPHFPMEQGPPS--SNGD-- 56

Query: 488 DYG-AFDF-KRKDFFGQRKQREFIPDSKK 568
           DYG +FDF KRKDFFGQRKQREFIPDSKK
Sbjct: 57  DYGNSFDFSKRKDFFGQRKQREFIPDSKK 85


>UniRef50_UPI00015B412D Cluster: PREDICTED: similar to vrille; n=1;
           Nasonia vitripennis|Rep: PREDICTED: similar to vrille -
           Nasonia vitripennis
          Length = 476

 Score = 42.7 bits (96), Expect = 0.006
 Identities = 21/46 (45%), Positives = 28/46 (60%)
 Frame = +2

Query: 431 PHFPMDQAPPSNGSSGDSHDYGAFDFKRKDFFGQRKQREFIPDSKK 568
           P  P   +  +N   G S++   +D  RK+ F QRKQREFIPD+KK
Sbjct: 120 PLSPHPDSYNNNNGGGGSNNNNNYDL-RKELFSQRKQREFIPDNKK 164


>UniRef50_UPI0000DB75B0 Cluster: PREDICTED: similar to vrille
           CG14029-PA, isoform A; n=1; Apis mellifera|Rep:
           PREDICTED: similar to vrille CG14029-PA, isoform A -
           Apis mellifera
          Length = 455

 Score = 37.5 bits (83), Expect = 0.23
 Identities = 17/23 (73%), Positives = 19/23 (82%)
 Frame = +2

Query: 500 FDFKRKDFFGQRKQREFIPDSKK 568
           FD  RK+ F QRKQREFIPD+KK
Sbjct: 131 FDI-RKELFSQRKQREFIPDNKK 152


>UniRef50_Q7Q3B8 Cluster: ENSANGP00000010250; n=2; Culicidae|Rep:
           ENSANGP00000010250 - Anopheles gambiae str. PEST
          Length = 464

 Score = 37.1 bits (82), Expect = 0.30
 Identities = 15/19 (78%), Positives = 17/19 (89%)
 Frame = +2

Query: 512 RKDFFGQRKQREFIPDSKK 568
           RK+ F QRKQREFIPD+KK
Sbjct: 1   RKELFSQRKQREFIPDNKK 19


>UniRef50_O18660 Cluster: BZIP transcription factor; n=5;
           Sophophora|Rep: BZIP transcription factor - Drosophila
           melanogaster (Fruit fly)
          Length = 729

 Score = 36.7 bits (81), Expect = 0.40
 Identities = 18/37 (48%), Positives = 22/37 (59%)
 Frame = +2

Query: 458 PSNGSSGDSHDYGAFDFKRKDFFGQRKQREFIPDSKK 568
           PS G +G      A    +K+ F QRKQREF PD+KK
Sbjct: 205 PSQGGNGPQ---SALTAAQKELFSQRKQREFTPDNKK 238


>UniRef50_A7TSY0 Cluster: Putative uncharacterized protein; n=1;
           Vanderwaltozyma polyspora DSM 70294|Rep: Putative
           uncharacterized protein - Vanderwaltozyma polyspora DSM
           70294
          Length = 397

 Score = 32.7 bits (71), Expect = 6.5
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -1

Query: 127 CQISLPLFTSRKNINVNSLSQCCYDEISNANGVALFQLLGH 5
           C  SLP   +  N NV   SQ CYD+ SN +G + F L  H
Sbjct: 30  CYGSLPSGFTFSNQNVYQSSQYCYDQCSN-SGYSYFALFNH 69


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 545,449,829
Number of Sequences: 1657284
Number of extensions: 9623334
Number of successful extensions: 26061
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26051
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 40658285374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)