Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0576
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0330 - 16816497-16819952                                         30   1.2  
06_03_0027 - 15645274-15645447,15645788-15645843,15649417-156494...    29   2.7  
01_01_1067 + 8403584-8404195,8404532-8404693,8404837-8405346,840...    29   2.7  
11_06_0463 + 23879587-23879771,23879783-23881658                       29   3.6  
09_01_0043 + 790859-790873,791410-791603,792521-792605,792719-79...    28   4.8  
01_06_1731 + 39516897-39517632,39517744-39517912,39517985-395184...    28   4.8  
12_02_0333 + 17660454-17660502,17660587-17660704,17661181-176612...    28   6.3  
05_01_0442 - 3500849-3500866,3500950-3501027,3501260-3501352,350...    28   6.3  

>10_08_0330 - 16816497-16819952
          Length = 1151

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -1

Query: 157  GQDHSFKI*KCQISLPLFTSRKNINVNSLSQCCYDEISNANGVALFQL 14
            G++  F+I    I + L T   +++ NSLSQC  DE+ N  G+    L
Sbjct: 938  GKEQIFEIKTYAIDIQLVTGI-SLSGNSLSQCIPDELMNLQGLQFLNL 984


>06_03_0027 -
           15645274-15645447,15645788-15645843,15649417-15649486,
           15649902-15650063,15650531-15650584,15651948-15651995,
           15652241-15652318,15652543-15652630,15653630-15653731,
           15653762-15653829,15654110-15654171,15654303-15654399
          Length = 352

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 440 PMDQAPPSNGSSGDSHDYGAFDFKRKDFFGQRKQREFIPDSKKTTATG 583
           P   APP+   SG+   +G  D   +D F  +K +  + +S    ATG
Sbjct: 23  PSPTAPPAR--SGEKRPFGDLDDDDEDVFASKKGKTKVEESAPGAATG 68


>01_01_1067 +
           8403584-8404195,8404532-8404693,8404837-8405346,
           8405434-8405493,8405721-8406137,8406576-8407100
          Length = 761

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -1

Query: 457 RGLVHREMRRDGETSARWWRSAGLHWGGP*GCTGPCAQQ--LLLAQDELGNHVSADCDWS 284
           R +V +E+RR  ET    WR   L W  P G  G  A    LL A  E G   +      
Sbjct: 679 RAVVRKEVRRHRETRRGRWRRLLLWW--PLGAHGALAGAGVLLDAAVEGGRETARQARAH 736

Query: 283 ARILTVV 263
           AR+L V+
Sbjct: 737 ARLLVVL 743


>11_06_0463 + 23879587-23879771,23879783-23881658
          Length = 686

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 325 PEPATAAERKGRCSPMARPS 384
           PEP TAAE+ G  SP   PS
Sbjct: 305 PEPPTAAEKSGDASPSLSPS 324


>09_01_0043 +
           790859-790873,791410-791603,792521-792605,792719-793075
          Length = 216

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 460 RRGLVHREMRRDGETSARWWRSAGLHWGGP*GCTGP 353
           + G V     +DG    R  R  G+  GGP G TGP
Sbjct: 123 KAGCVGSRADQDGRLDGREVRDGGISSGGPRGNTGP 158


>01_06_1731 +
           39516897-39517632,39517744-39517912,39517985-39518488,
           39518619-39518747,39519849-39519990,39520082-39520453
          Length = 683

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +1

Query: 298 PPKHGCRVHPEPATAAERKGRCSPMARPSAD 390
           PP  G  V P PAT A + G C P A    D
Sbjct: 63  PPPVGLPVPPLPATMAPQPGYCVPAAATVVD 93


>12_02_0333 +
           17660454-17660502,17660587-17660704,17661181-17661255,
           17661341-17661412,17661606-17661643,17661758-17661791,
           17662396-17662519,17663334-17663417,17663991-17664056,
           17664110-17664316
          Length = 288

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -1

Query: 454 GLVHREMRRDGETSARWWRSAGLHWGGP*GC 362
           GL H   +R    S  +W   G +W  P GC
Sbjct: 152 GLEHALGKRTTADSGEFWHVEGFYWRNPVGC 182


>05_01_0442 -
           3500849-3500866,3500950-3501027,3501260-3501352,
           3501419-3501536,3502815-3502945,3503027-3503299,
           3504825-3504882,3505065-3505388,3507404-3507852,
           3509514-3509554,3510263-3510412,3510519-3510906
          Length = 706

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -1

Query: 454 GLVHREMRRDGETSARWWRSAGLHWGGP*GCTGP 353
           G V     +DG    R  R  G+  GGP G TGP
Sbjct: 220 GCVGSRADQDGRIGGREVRDGGISSGGPKGNTGP 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,204,417
Number of Sequences: 37544
Number of extensions: 280437
Number of successful extensions: 888
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)