Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0576
         (589 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11462| Best HMM Match : UBA (HMM E-Value=1.3)                       30   1.6  
SB_59124| Best HMM Match : Bac_luciferase (HMM E-Value=1.6)            28   4.9  
SB_57013| Best HMM Match : Pico_P2A (HMM E-Value=3.2)                  27   8.6  

>SB_11462| Best HMM Match : UBA (HMM E-Value=1.3)
          Length = 462

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 339 CCWLRMNSATMFRRTVTGPHESSLWLKIFAVFENSFAGII 220
           C W+     + F   +   +E SLW++ F V  N+F  I+
Sbjct: 80  CAWVLPRPQSWFDSALMNSYEDSLWMEKFHVSRNTFMYIL 119


>SB_59124| Best HMM Match : Bac_luciferase (HMM E-Value=1.6)
          Length = 1953

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 498 PSTSNAKTSSGNANNASSYRTAKRRR 575
           PS  ++++S+GN   + +Y TAKR R
Sbjct: 313 PSAVSSQSSAGNIGASQTYNTAKRNR 338


>SB_57013| Best HMM Match : Pico_P2A (HMM E-Value=3.2)
          Length = 474

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 460 RRGLVHREMRRDGETSARWWRSAGLHWGGP*G-CTGPCAQQLLLA 329
           RRG+  R++R        ++R + L WG P G C  P  Q + ++
Sbjct: 13  RRGIA-RDLRYRSRLEGLYFRQSHLKWGSPQGQCEAPLPQLIAVS 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,857,814
Number of Sequences: 59808
Number of extensions: 296081
Number of successful extensions: 866
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)