Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0576
         (589 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    27   0.45 
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    25   1.8  
AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    24   4.2  
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    24   4.2  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    23   5.5  
AJ618922-1|CAF02001.1|  272|Anopheles gambiae odorant-binding pr...    23   9.7  

>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 27.1 bits (57), Expect = 0.45
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 70  TVNLHLYFFWT*KVGVKFDIFKF*NCDLDR 159
           T NLH  F+W  KV   +D  K    D++R
Sbjct: 796 TSNLHTDFYWLMKVACTWDDVKLLRMDMER 825


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 470 SSGDSHDYGAFDFKRKDFFGQRKQREFIPDSKKTTATG 583
           S GDS D   +DF+  D+  Q +Q      +KKT   G
Sbjct: 83  SQGDSKDNEIYDFEDPDYIVQEEQE----PAKKTQTRG 116


>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 460 RRGLVHREMRRDGETSARWWRS 395
           +RG+  R     GE S RW RS
Sbjct: 100 KRGISQRSSDAGGEPSRRWTRS 121


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 460 RRGLVHREMRRDGETSARWWRS 395
           +RG+  R     GE S RW RS
Sbjct: 100 KRGISQRSSDAGGEPSRRWTRS 121


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
            topoisomerase protein.
          Length = 1039

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +3

Query: 501  STSNAKTSSGNANNASSYRTAKRRRLLGP 587
            + +N+ +SSG  ++ S   ++KR++ + P
Sbjct: 965  NNTNSSSSSGKKSSHSGTNSSKRKKTVSP 993


>AJ618922-1|CAF02001.1|  272|Anopheles gambiae odorant-binding
           protein OBPjj5a protein.
          Length = 272

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -1

Query: 103 TSRKNINVNSLSQCCYDEISNANGVAL 23
           +SR     N   QC Y+E+   +G+ +
Sbjct: 161 SSRNTCRRNCYQQCIYEELEAVDGLEI 187


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 570,881
Number of Sequences: 2352
Number of extensions: 10069
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 56347938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)