Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0576
         (589 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25980.1 68415.m03120 jacalin lectin family protein similar t...    31   0.43 
At3g58480.1 68416.m06518 calmodulin-binding family protein conta...    29   2.3  
At4g38040.1 68417.m05373 exostosin family protein contains Pfam ...    28   5.3  
At2g23100.1 68415.m02756 DC1 domain-containing protein contains ...    27   9.3  

>At2g25980.1 68415.m03120 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 449

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 425 VSPHFPMDQAPPSNGSSGDSHDYGAFDFKRKDFFGQ 532
           + P  P ++   S G  G+S D GAFD  RK + GQ
Sbjct: 297 IPPPPPTEKLQGSGGDGGESWDDGAFDGVRKIYVGQ 332


>At3g58480.1 68416.m06518 calmodulin-binding family protein contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 575

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 63  HCDSEFTFIFFLDVKSGSEI*H 128
           HCDS+  F ++LD+  G E+ H
Sbjct: 206 HCDSKQPFFYWLDIGQGKELNH 227


>At4g38040.1 68417.m05373 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 425

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 34  HSHWIFRHNNIVTVNLHLYFFWT*KVGVKFDIF 132
           HS ++  HNN+V V  H  F W     VKFD F
Sbjct: 380 HSEFVSLHNNLVKVQKH--FQWN-SPPVKFDAF 409


>At2g23100.1 68415.m02756 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 711

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 419 LSVSPHFPMDQAPPSNGSSGDSHDYGAFDFKRKDFFGQRKQ 541
           +S+ P+F   + P   G S  S   G+FD    D FG R++
Sbjct: 140 ISLDPNFDTSKIPQEWGESSSSDSEGSFD--SDDEFGGRRR 178


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,787,471
Number of Sequences: 28952
Number of extensions: 210049
Number of successful extensions: 499
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)