Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0575
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    23   1.8  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    23   1.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.2  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   4.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.8  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   9.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   9.8  

>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 515 GDKFSADEVDEAYDQMDID 571
           G+ FS D+    YD +DID
Sbjct: 16  GEVFSEDKYTTKYDNVDID 34


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 515 GDKFSADEVDEAYDQMDID 571
           G+ FS D+    YD +DID
Sbjct: 16  GEVFSEDKYTTKYDNVDID 34


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 436 DVIFVRAAGHAVGE 395
           D+I+VRA G AVG+
Sbjct: 34  DIIWVRADGSAVGD 47


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 503 LMTWGDKFSADEVDEAYD 556
           L  W DKF  +E+   YD
Sbjct: 71  LQNWMDKFRGEEIAILYD 88


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 241 PANGPRQGWHHRQERLARHL 300
           P  GP    HH Q +  +HL
Sbjct: 345 PTMGPPHHHHHHQTQSLQHL 364


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 300 KVARKSFLPMMPSLSWSISWNASLNSAT 217
           K+ARK F      L  S SW++  N+ T
Sbjct: 343 KLARKQFQKNTTGLERSRSWSSLDNTNT 370


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 464 EXGKIDSERLRHALMTWGDKFSADEVDEA 550
           E  KID   L+H +    D+F   + ++A
Sbjct: 396 ESNKIDETTLKHLIDVASDRFFITDGEKA 424


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 464 EXGKIDSERLRHALMTWGDKFSADEVDEA 550
           E  KID   L+H +    D+F   + ++A
Sbjct: 396 ESNKIDETTLKHLIDVASDRFFITDGEKA 424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,716
Number of Sequences: 438
Number of extensions: 1581
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)