Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0574
         (614 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    24   1.2  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    23   2.0  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   2.0  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   6.2  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 370 WRSCVRFLLKHVWFL 414
           W   +  +LKHVWFL
Sbjct: 2   WSENITDVLKHVWFL 16


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +1

Query: 307 PRASAKTIKTIPRCAFVSFCAWRSCVRFLLKHVW 408
           PRA  KT+K      FV    W   + F L  V+
Sbjct: 278 PRAKIKTVKMTLVIVFVFVLCWSPYIVFDLLQVY 311


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 36  SILLTSNVYLWLVLAADVRVHA 101
           S L+    ++WLVL++ VR +A
Sbjct: 488 SFLVNDFGFIWLVLSSTVRAYA 509


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 108 RRKRALLHLQRGRAKDKHLK*EEWISHNCPKLRNLS 1
           R++    ++ R  A  K L    WIS  C K+ N S
Sbjct: 287 RKRLRFAYVTRTGANIKKLIVNTWISLFCVKVTNCS 322


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,530
Number of Sequences: 336
Number of extensions: 2876
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)