Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0574
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    31   0.17 
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual    27   2.2  
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po...    25   8.7  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    25   8.7  
SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr ...    25   8.7  

>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 20/72 (27%), Positives = 38/72 (52%)
 Frame = -3

Query: 255  LDRFISQQKHISSSYVRACINKVTLCNVTKKNTPDLNALKLSKI*NPYYRRKRALLHLQR 76
            + +++  ++ +++ YV    +KVT+CN   + +   N  +L+K+   +    R L HL R
Sbjct: 984  MSKYLPVKRALAAEYVVDTGDKVTVCNKNAEVSAKHNYYRLAKV---WLMLGRLLGHLSR 1040

Query: 75   GRAKDKHLK*EE 40
               KD H+  EE
Sbjct: 1041 TENKD-HINDEE 1051


>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 223 DMLLLRDEAVEDASPSGTAVLPNPGNP 303
           D +++     E+ +PS TA LP+P NP
Sbjct: 60  DGIMVGSRTAENDNPSLTAKLPDPANP 86


>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 471

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 376 NATHKKRQRRSEGSFL*F*RWL 311
           N  H K+Q+RS  S L F RWL
Sbjct: 439 NRLHHKKQKRSPISQLLFSRWL 460


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -3

Query: 267 WRGVLDRFISQQKHISSSYVRACINKVTLCNVTKKNTPDLNALKLS 130
           WR V    IS +K   + Y +     +T C+   K   D   L +S
Sbjct: 306 WREVTKMLISGKKPSYTKYKKVTAEYITFCDKKFKEDEDAKRLYMS 351


>SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 284

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 351 LCLFLCVAFVCAVLVETCLVLV 416
           +C  +CV  +C ++   C VL+
Sbjct: 256 ICFGICVVIICVIVAVLCGVLI 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,205
Number of Sequences: 5004
Number of extensions: 46295
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)