Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0574
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1059 - 10775143-10776063                                         33   0.18 
01_07_0291 + 42555233-42555444,42556515-42556550,42556652-425567...    28   6.8  
06_01_0870 + 6623478-6624257                                           27   8.9  
05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846...    27   8.9  

>08_01_1059 - 10775143-10776063
          Length = 306

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = -1

Query: 434 RKLLKLHKNQTCFNKNRT---HER-HAQKETKAQRGIVFIVLALALGRGLPGFGNTAVP 270
           R+L K +  Q  F  ++    H+  H ++ + A+RG      A A GRGL GFG+  VP
Sbjct: 104 RRLFKCNYCQRKFYTSQALGGHQNAHKRERSLAKRGAAVAAAAAAAGRGLYGFGDPFVP 162


>01_07_0291 +
           42555233-42555444,42556515-42556550,42556652-42556796,
           42556885-42556938,42557130-42557260,42557830-42558056,
           42558670-42558846,42558928-42559076
          Length = 376

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -3

Query: 144 ALKLSKI*NPYYRRKRALLHLQRGR 70
           A ++S++  PY RR RA+ HL++GR
Sbjct: 220 AFRMSEVAEPYIRR-RAVRHLEKGR 243


>06_01_0870 + 6623478-6624257
          Length = 259

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 244 EAVEDASPSGTAVLPNPGNPRPRASAK 324
           E V++  P    +LP P +PR RA+A+
Sbjct: 93  EYVDEVWPQAPRLLPPPSSPRARAAAR 119


>05_04_0443 -
           21283680-21283940,21284044-21284118,21284620-21284649,
           21286744-21287247
          Length = 289

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 175 VTEGDLVDASSDVAGRDMLLLRDEAVEDASPSGTAVLP-NPGNPRPRASAKTIKTIP 342
           ++ GD +   S  A  DM  + +  +  A PS  AVLP  P +P PRAS     + P
Sbjct: 1   MSHGDTIPLHSSSAQSDMDEI-ESLIHAAPPSAAAVLPARPPSP-PRASIPVSSSPP 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,033,293
Number of Sequences: 37544
Number of extensions: 301920
Number of successful extensions: 847
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)