Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0574
         (614 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44865| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   5.2  
SB_1754| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.2  
SB_25491| Best HMM Match : Peptidase_M50 (HMM E-Value=2.2)             28   6.9  

>SB_44865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 243 ISQQKHISSSYVRACINKVTLCNVTKKNTPDLNALKLSKI*NPYYR 106
           + + KH+  S+  A + KV L   TKK T      K++K+  P YR
Sbjct: 209 VEEAKHLKMSHHEAKLQKVLLTVYTKKITIADMETKVTKLEAPIYR 254


>SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1683

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 500  FCVIYFFLLTTSLLVDNNII*ILQYLSIFFFQYI 601
            F +I   L+  S++++NNII I + + IF F  I
Sbjct: 1634 FSIIVVVLIIISIIINNNIIIINKIIIIFIFNNI 1667


>SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 348 RLCLFLCVAFVCAVLVETCLVLV 416
           R+C+ LC + VC VL  +C+ +V
Sbjct: 124 RVCIVLCPSCVCIVLCPSCVCIV 146


>SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 885

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 8   LRSLGQLCDIHSSHFKCLSLARPRCRCK 91
           + S G+L   H+S  + L   RPRCRC+
Sbjct: 342 ISSTGRLYCPHTSRAEVLCRRRPRCRCR 369


>SB_1754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1521

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +2

Query: 248 RSRTPRHQERPCY 286
           RSR PRHQERP Y
Sbjct: 896 RSRVPRHQERPRY 908


>SB_25491| Best HMM Match : Peptidase_M50 (HMM E-Value=2.2)
          Length = 771

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 286 VTRPFLMARRPRPLHLSAEAYLFQLRQSLH 197
           + +PF   ++  PLHL+AE Y   LRQ LH
Sbjct: 98  IEKPF-PGKQCTPLHLNAELYKRCLRQMLH 126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,845,218
Number of Sequences: 59808
Number of extensions: 359980
Number of successful extensions: 944
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)