Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0574
         (614 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061611-1|AAL29159.1|  179|Drosophila melanogaster SD07644p pro...    31   1.6  
AE014298-2164|AAF48465.1|  179|Drosophila melanogaster CG6340-PA...    31   1.6  

>AY061611-1|AAL29159.1|  179|Drosophila melanogaster SD07644p
           protein.
          Length = 179

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = -3

Query: 426 VKITQEPNMFQQEPHTRTPRTKRDKGAARDRFYSFSAG-SRSGVARIR*HGRS*WRGVLD 250
           ++  Q+    +  PH ++P+T  D    +    ++ +G S  G  R R   R   R    
Sbjct: 20  IRAPQQQQQLRHLPHAKSPKTTTDSLLKQKNNNNYGSGNSPRGKERERERERE--REKTK 77

Query: 249 RFISQQKHISSSYVRACINKVTLCNVTK 166
               QQ H SSS  R  I++V  C  TK
Sbjct: 78  PMSQQQSHRSSS--RGRIDEVKTCRCTK 103


>AE014298-2164|AAF48465.1|  179|Drosophila melanogaster CG6340-PA,
           isoform A protein.
          Length = 179

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = -3

Query: 426 VKITQEPNMFQQEPHTRTPRTKRDKGAARDRFYSFSAG-SRSGVARIR*HGRS*WRGVLD 250
           ++  Q+    +  PH ++P+T  D    +    ++ +G S  G  R R   R   R    
Sbjct: 20  IRAPQQQQQLRHLPHAKSPKTTTDSLLKQKNNNNYGSGNSPRGKERERERERE--REKTK 77

Query: 249 RFISQQKHISSSYVRACINKVTLCNVTK 166
               QQ H SSS  R  I++V  C  TK
Sbjct: 78  PMSQQQSHRSSS--RGRIDEVKTCRCTK 103


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,422,714
Number of Sequences: 53049
Number of extensions: 516358
Number of successful extensions: 1474
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1474
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2517878700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)