Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0574
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   3.1  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   3.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   3.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   3.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.6  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -1

Query: 401 CFNKNRTHERHAQKETKAQRGIVFIVLALALGRGLP 294
           C+N++RT ERH  +        + ++ ++ +   LP
Sbjct: 329 CWNEHRTLERHNIRTVAQSDETLQMIASMKIKEALP 364


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 491 LGQFCVIYFFLLTTSLLV 544
           +G+  +I FF+LTT L++
Sbjct: 1   MGRITIIRFFVLTTMLMM 18


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -1

Query: 401 CFNKNRTHERHAQKETKAQRGIVFIVLALALGRGLP 294
           C+N++RT ERH  +        + ++ ++ +   LP
Sbjct: 329 CWNEHRTLERHNIRTVAQSDETLQMIASMKIKEALP 364


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -1

Query: 401 CFNKNRTHERHAQKETKAQRGIVFIVLALALGRGLP 294
           C+N++RT ERH  +        + ++ ++ +   LP
Sbjct: 329 CWNEHRTLERHNIRTVAQSDETLQMIASMKIKEALP 364


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 274 TAVLPNPGNPRPRASAKTIKTIPRCAF 354
           TA L     P P   AKTI  I R  F
Sbjct: 444 TAELRKKEPPHPIRVAKTIDVIARITF 470


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 274 TAVLPNPGNPRPRASAKTIKTIPRCAF 354
           TA L     P P   AKTI  I R  F
Sbjct: 430 TAELRKKEPPHPIRVAKTIDVIARITF 456


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 274 TAVLPNPGNPRPRASAKTIKTIPRCAF 354
           TA L     P P   AKTI  I R  F
Sbjct: 464 TAELRKKEPPHPIRVAKTIDVIARITF 490


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 274 TAVLPNPGNPRPRASAKTIKTIPRCAF 354
           TA L     P P   AKTI  I R  F
Sbjct: 413 TAELRKKEPPHPIRVAKTIDVIARITF 439


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,995
Number of Sequences: 438
Number of extensions: 3520
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)