Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0574
         (614 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47790.1 68416.m05206 ABC transporter family protein contains...    28   4.3  
At3g18680.2 68416.m02373 aspartate/glutamate/uridylate kinase fa...    28   4.3  
At3g18680.1 68416.m02372 aspartate/glutamate/uridylate kinase fa...    28   4.3  
At3g20260.1 68416.m02566 expressed protein                             28   5.7  
At2g42040.1 68415.m05199 expressed protein                             28   5.7  
At3g27870.1 68416.m03475 haloacid dehalogenase-like hydrolase fa...    27   7.5  

>At3g47790.1 68416.m05206 ABC transporter family protein contains
           Pfam domain, PF00005: ABC transporter
          Length = 901

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 316 WLSVGGCQDSVTRPFLMARRPRPLHLSAEAYLFQLRQS 203
           W +     D+V RP  + R PR ++L++ AYL  L+ S
Sbjct: 255 WYNSTYKNDTVVRPMALIRVPRLVNLASNAYLEFLKGS 292


>At3g18680.2 68416.m02373 aspartate/glutamate/uridylate kinase
           family protein similar to UMP-kinase GB:CAB38122
           gi:4468612 from [Lactococcus lactis] ; contains Pfam
           profile PF00696: Amino acid kinase family
          Length = 366

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -3

Query: 144 ALKLSKI*NPYYRRKRALLHLQRGR 70
           A ++S++  PY RR RA+ HL++GR
Sbjct: 195 AFRMSEVAEPYIRR-RAIRHLEKGR 218


>At3g18680.1 68416.m02372 aspartate/glutamate/uridylate kinase
           family protein similar to UMP-kinase GB:CAB38122
           gi:4468612 from [Lactococcus lactis] ; contains Pfam
           profile PF00696: Amino acid kinase family
          Length = 339

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -3

Query: 144 ALKLSKI*NPYYRRKRALLHLQRGR 70
           A ++S++  PY RR RA+ HL++GR
Sbjct: 195 AFRMSEVAEPYIRR-RAIRHLEKGR 218


>At3g20260.1 68416.m02566 expressed protein
          Length = 437

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 226 MLLLRDEAVEDASPSGTAVLPNPGNPRPRASAKTIKTIPRC 348
           ML     + +    +G  + P+P  P PR+++K + +  RC
Sbjct: 131 MLFFDRLSSQQLKETGIGIAPSPSTPSPRSASKKLSSPFRC 171


>At2g42040.1 68415.m05199 expressed protein
          Length = 269

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 241 DEAVEDASPSGTAVLPNPGNPRPRASAKTIKTIPRCAFVSFCAWRSCVRFLL 396
           DE  E+AS  G  +  N G  + + S   ++   RC+ V+   WR C + L+
Sbjct: 136 DEEDEEASGGGGRI--NKGKKKAKKSGGGLEEGSRCSRVNGRGWRCCQQTLV 185


>At3g27870.1 68416.m03475 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from {Mus
           musculus} SP|P98200, Homo sapiens SP|O43520,
           {Arabidopsis thaliana} SP|P98204; contains InterPro
           accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1174

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 190 LVDASSDVAGRDMLLLRDEAVEDASPSG 273
           L+DA++D   +D++LL   AVED    G
Sbjct: 673 LIDAAADKIEKDLILLGSTAVEDKLQKG 700


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,327,528
Number of Sequences: 28952
Number of extensions: 240827
Number of successful extensions: 610
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)