Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0573
         (723 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    25   0.82 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    25   0.82 
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   2.5  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   2.5  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   5.8  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = +3

Query: 219 WDYFE-PGAAAAQSTPPPPKHAPQVCPRQCSCGAEPRI 329
           W + +   +A A+    P   +P  C R C  G  PRI
Sbjct: 83  WKHLDFRNSATAELLKNPSLSSPDECARACREGEPPRI 120


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = +3

Query: 219 WDYFE-PGAAAAQSTPPPPKHAPQVCPRQCSCGAEPRI 329
           W + +   +A A+    P   +P  C R C  G  PRI
Sbjct: 83  WKHLDFRNSATAELLKNPSLSSPDECARACREGEPPRI 120


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 456 GKEVSLWQ-TMMERPNFWVEGS 518
           G E++++  T  E PN+W +GS
Sbjct: 242 GHEIAVFSLTHKEDPNYWSQGS 263


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 456 GKEVSLWQ-TMMERPNFWVEGS 518
           G E++++  T  E PN+W +GS
Sbjct: 249 GHEIAVFSLTHKEDPNYWSQGS 270


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +2

Query: 413 RNIHGCQRQLDG 448
           R++HG Q+Q+DG
Sbjct: 96  RSLHGPQQQMDG 107


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,065
Number of Sequences: 336
Number of extensions: 2758
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)