Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0573
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.67 
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    27   3.6  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    26   6.3  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   8.3  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.3  

>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 261 PPPPKHAPQVCPRQCSCGAEPR 326
           PPPPKHA Q+     S G+ PR
Sbjct: 60  PPPPKHASQLRAGGSSTGSTPR 81


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 9   ASARIRRTPANLEWGVNSEAGEVSEPEAGRMRPE 110
           AS+  RR P N++   +++   VS PEA  +R E
Sbjct: 484 ASSIRRRHPVNIQEDEDADISTVSLPEAAHLREE 517


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 421 TWVPTSTGWIVRAKKFHSGRQ*WNVRT 501
           TW+P ST  ++ +   +S  + W++RT
Sbjct: 294 TWLPQSTSQVISSCSANSALKLWDLRT 320


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +2

Query: 464 SFTLADNDGTSELLGRGILTFKAPTNQLTATNANKLFIDFFSSLIQYLID 613
           S   +DN+  S +    I + +  T ++TA++   LF+D  SSL    ID
Sbjct: 347 SANASDNESLSRVASELITSLR--TGKVTASDQRVLFVDALSSLSLKHID 394


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 455 GQRSFTLADNDGTSELLGRGILT 523
           G+R+  +    GT+EL+G G+LT
Sbjct: 408 GKRTSKIGKLRGTNELIGEGVLT 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,838
Number of Sequences: 5004
Number of extensions: 46706
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)