Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0573
(723 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0250 - 1852619-1854124,1855224-1856153,1856293-1856409,185... 29 2.8
11_01_0251 - 1926810-1928273 29 2.8
09_04_0627 - 19061106-19061474,19062067-19062909,19063395-190635... 29 4.9
05_07_0280 - 28920864-28920971,28921076-28921175,28921267-289213... 29 4.9
03_05_1104 + 30431833-30432143,30432789-30432862,30432949-304330... 29 4.9
07_01_0578 + 4295386-4296489,4297394-4297507 28 6.5
05_05_0264 + 23675171-23676541 28 6.5
12_02_0760 - 22888636-22889407,22889503-22889769,22890001-228903... 28 8.6
11_05_0050 + 18665251-18665613,18667280-18667744,18668548-186690... 28 8.6
07_01_0583 + 4338003-4338377,4338455-4338647,4338734-4339326 28 8.6
03_01_0133 - 1057679-1057880,1058112-1058377 28 8.6
>12_01_0250 -
1852619-1854124,1855224-1856153,1856293-1856409,
1856777-1857157
Length = 977
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -1
Query: 432 WHPCMFLCRAR-VAPLVMRARVQRVLAQEQARGRLLC-GARR 313
++ +F C R A RARV+RVL E+ RG + C GA R
Sbjct: 853 YYASLFDCLQRSAAAAAERARVERVLLGEEIRGVVACEGAER 894
>11_01_0251 - 1926810-1928273
Length = 487
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -1
Query: 432 WHPCMFLCRAR-VAPLVMRARVQRVLAQEQARGRLLC-GARR 313
++ +F C R A RARV+RVL E+ RG + C GA R
Sbjct: 363 YYASLFDCLQRSAAAAAERARVERVLLGEEIRGVVACEGAER 404
>09_04_0627 -
19061106-19061474,19062067-19062909,19063395-19063501,
19064301-19064332,19064384-19064663,19065092-19065475,
19066730-19066803,19067244-19067310,19067415-19067486,
19067941-19068000,19068683-19068734,19068874-19068943,
19069110-19069372
Length = 890
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 237 GAAAAQSTPPPPKHAPQVCPR 299
G AAA S PPPP+ P P+
Sbjct: 421 GYAAASSPPPPPQRCPSPSPK 441
>05_07_0280 -
28920864-28920971,28921076-28921175,28921267-28921394,
28922013-28922180,28922280-28922395,28922584-28922736,
28922904-28923047,28923401-28924133
Length = 549
Score = 28.7 bits (61), Expect = 4.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 261 PPPPKHAPQVCPRQCS 308
PPPP+H PQ P+Q +
Sbjct: 55 PPPPRHQPQQAPQQAA 70
>03_05_1104 +
30431833-30432143,30432789-30432862,30432949-30433067,
30434462-30434526,30434962-30435310
Length = 305
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 234 PGAAAAQSTPPPPKHAPQVCPRQCSCGAEP 323
P AAAA+ PPPP P PR C+ +P
Sbjct: 32 PTAAAAERHPPPP---PVRLPRPCASSHDP 58
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 399 LSLGTGTYMGANVNWMDSAGKEVSLWQTMMERPNFWVEGSLPLRPQLIN 545
L L G ++G V W +SA K++ E P+ +G + RP++ N
Sbjct: 243 LDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPRPKMAN 291
>05_05_0264 + 23675171-23676541
Length = 456
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 240 AAAAQSTPPPPKHAPQVCPRQCSCGAEP 323
+AAAQ +PPPP P++ P S A P
Sbjct: 15 SAAAQPSPPPP---PRLAPAPASASASP 39
>12_02_0760 -
22888636-22889407,22889503-22889769,22890001-22890302,
22890402-22890512,22890990-22891568,22892026-22892087,
22892434-22892754,22893434-22893776
Length = 918
Score = 27.9 bits (59), Expect = 8.6
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +2
Query: 329 SSRPRACSCASTRCTLARITSGATLARHRNIHGCQRQL-DG*CGQRSFTLADNDGTSELL 505
SS+PR + A++R + R+ + + + + G Q Q D + +AD ++ +
Sbjct: 24 SSQPRRTAAAASRVSCTRVGALSEVVNGELVVGDQEQTTDDLLTRHKNVVADYTLSATVT 83
Query: 506 GRGILTFKAPTNQLTATNANKLFIDFFSSLIQ 601
P N + LF+DFFSS I+
Sbjct: 84 VSLKQDDSTPQKVADMVNRDWLFLDFFSSHIE 115
>11_05_0050 +
18665251-18665613,18667280-18667744,18668548-18669037,
18669115-18669143
Length = 448
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 249 AQSTPPPPKHAPQVCPRQCSCG 314
A + PPPP P R C CG
Sbjct: 78 ASAPPPPPSQPPAFFERPCICG 99
>07_01_0583 + 4338003-4338377,4338455-4338647,4338734-4339326
Length = 386
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 219 WDYFEPGAAAAQSTPPPPKHAPQ 287
W EP AA+ + +PPPP P+
Sbjct: 353 WRPVEPEAASKKRSPPPPPRRPE 375
>03_01_0133 - 1057679-1057880,1058112-1058377
Length = 155
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 323 PHSSRPRACSCASTRCT-LARITSGATLAR 409
P +RPRAC+ AS CT AR+ S A + R
Sbjct: 24 PAPARPRACTHASPACTRSARMRSEAQIDR 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,643,207
Number of Sequences: 37544
Number of extensions: 346221
Number of successful extensions: 2070
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2017
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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