Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0573
(723 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4929| Best HMM Match : C2 (HMM E-Value=2.4e-33) 44 9e-05
SB_40281| Best HMM Match : C2 (HMM E-Value=6.7e-39) 40 0.002
SB_18815| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06) 29 3.8
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_39465| Best HMM Match : PDH (HMM E-Value=1.5) 28 6.7
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 28 6.7
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
>SB_4929| Best HMM Match : C2 (HMM E-Value=2.4e-33)
Length = 567
Score = 44.4 bits (100), Expect = 9e-05
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = +3
Query: 399 LSLGTGTYMGANVNWMDSAGKEVSLWQTMMERPNFWVEGSLPLRPQL 539
L LG GT AN W DS+ E +W TM+ R N W++ +PLRP +
Sbjct: 518 LRLGLGT--SAN-EWDDSSKDEAQIWHTMLTRTNVWIQVVVPLRPNM 561
>SB_40281| Best HMM Match : C2 (HMM E-Value=6.7e-39)
Length = 230
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +3
Query: 405 LGTGTYMGANVNWMDSAGKEVSLWQTMMERPNFWVEGSLPLRPQL 539
LG GT W D+ G+E++ WQ MM+ PN W + +L LR +
Sbjct: 185 LGMGT---KQEKWDDAEGQEITAWQAMMDFPNEWHDSTLTLRSSM 226
>SB_18815| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +2
Query: 365 RCTLARITSGATLARHRNIHGCQRQLDG*CGQRSFTLADNDGTSELLGRGILTFKAPTNQ 544
RC I G + RH ++H LDG G+R + + +EL+ RG L + + Q
Sbjct: 277 RCFGLLICPGRNI-RHSDMHLLSGALDGESGERGYEVKSITSEAELVARGQLLKRQSSPQ 335
Query: 545 LT 550
T
Sbjct: 336 QT 337
>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2077
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 532 GLKGKDPSTQKFGRSIIVCQSETSLPA 452
GLK DP + F R I+ C+SE PA
Sbjct: 749 GLKEIDPQSMPFQRYIVRCESEVDAPA 775
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 320 APHSSRPRACSCASTRCTLAR 382
APH+ RP +CA RC L+R
Sbjct: 702 APHTCRPNEFTCADKRCILSR 722
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +2
Query: 344 ACSCASTRCTLARITSGATLARHRNIHGCQRQLDG*CGQRSFTLADNDGTSELLGR 511
A C S RC LA + +G + C + DG G+ T + GTS LGR
Sbjct: 5820 ALCCESRRCDLAMMKNGECFTMSCPVEKCTVE-DG--GEFQITFVNRKGTSITLGR 5872
>SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
Length = 998
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 234 PGAAAAQSTPPPPKHAPQVCPRQCSCG 314
P A +S P K+ + CP C CG
Sbjct: 343 PMTIATESVTPTQKYRARACPSDCQCG 369
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +3
Query: 234 PGAAAAQSTPPPPKHAPQVCPRQCSCGAEP 323
P A PPPP P + P CG +P
Sbjct: 72 PSTPAPPPPPPPPSSGPPLPPSNGKCGRKP 101
>SB_39465| Best HMM Match : PDH (HMM E-Value=1.5)
Length = 369
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3
Query: 429 ANVNWMDSAGKEVSLW 476
+N+NWM + GKEV+ W
Sbjct: 333 SNINWMKAHGKEVTKW 348
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = +2
Query: 365 RCTLARITSGATLARHRNIHGCQR 436
RC LAR T LARHR HG R
Sbjct: 1320 RCGLARHTIRRGLARHRTRHGLAR 1343
>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 323 PHSSRPRACSCASTRCTLAR 382
PH+ RP +CA RC L+R
Sbjct: 548 PHTCRPNEFTCADKRCILSR 567
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,946,381
Number of Sequences: 59808
Number of extensions: 376158
Number of successful extensions: 1268
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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