Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0573
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077546-5|AAC26316.1|  313|Caenorhabditis elegans Hypothetical ...    30   1.5  
AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical ...    29   2.5  
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical...    29   3.4  
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    29   3.4  
AC024830-10|AAF59610.3|  728|Caenorhabditis elegans Hypothetical...    29   3.4  
Z77657-9|CAB01149.2|  381|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    28   5.9  

>AF077546-5|AAC26316.1|  313|Caenorhabditis elegans Hypothetical
           protein T08E11.3 protein.
          Length = 313

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 676 KEECQNLSHFLFTEYKKSAMFVN*-ILY*RGKKVYEKFVCIGGSQLISW 533
           KEEC+N    + TEY    +  N   L    K  +EKF   G S+ ISW
Sbjct: 57  KEECENRKWSIETEYTLKLVSHNGKSLKKNSKDTFEKFTGHGWSKCISW 105


>AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical
           protein ZC123.1 protein.
          Length = 730

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 234 PGAAAAQSTPPPPKHAPQVCPRQCSCGAEP 323
           P   AA   PPPP       P QC CG++P
Sbjct: 135 PPTPAAPPPPPPPPPPAPEAPTQC-CGSQP 163


>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3b protein.
          Length = 1398

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 110 FRTHTTGLWLTHFARFTVDAPLQVCRRSAYSG 15
           FR ++ G   ++  RF  DAP + CR+  Y G
Sbjct: 181 FRPYSEGYGSSNLLRFYYDAPAKQCRQFIYKG 212


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3a protein.
          Length = 1816

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 110 FRTHTTGLWLTHFARFTVDAPLQVCRRSAYSG 15
           FR ++ G   ++  RF  DAP + CR+  Y G
Sbjct: 181 FRPYSEGYGSSNLLRFYYDAPAKQCRQFIYKG 212


>AC024830-10|AAF59610.3|  728|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.1 protein.
          Length = 728

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = -3

Query: 715 VEVSKSIYKFCRSKEECQNLSHFL 644
           +++ K+I  FCR+K++C ++ HFL
Sbjct: 503 LQMDKAIV-FCRTKQQCDHMEHFL 525


>Z77657-9|CAB01149.2|  381|Caenorhabditis elegans Hypothetical
           protein F08H9.5 protein.
          Length = 381

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -3

Query: 148 HDESELRNTS-L*SSGRIRPASGSLTSPASLLTPHSRFAGVLRIRADALL 2
           +D  E+ NTS + SSG +   SGS  +P S L+P S +   +R R+D ++
Sbjct: 322 YDVLEIYNTSTVISSGLVANLSGSAVAPYSWLSP-SNYV-TMRFRSDGVV 369


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 225 YFEPGAAAAQSTPPPPKHAPQVCP 296
           Y EP  A  Q  P PP+  P V P
Sbjct: 232 YIEPSTAKPQPRPQPPRTRPYVAP 255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,684,082
Number of Sequences: 27780
Number of extensions: 276140
Number of successful extensions: 1083
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)