Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0573
         (723 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12770.1 68417.m02004 auxilin-related low similarity to SP|Q2...    30   1.8  
At5g52520.1 68418.m06516 tRNA synthetase class II (G, H, P and S...    28   7.2  
At4g00165.1 68417.m00017 protease inhibitor/seed storage/lipid t...    28   7.2  
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    24   7.6  

>At4g12770.1 68417.m02004 auxilin-related low similarity to
           SP|Q27974 Auxilin {Bos taurus}
          Length = 909

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = -1

Query: 381 RARVQRVLAQEQARGRLLCGARRHRSTASGRLEERASVEV 262
           RA VQR  A  +AR R   GAR     A+    ERA+ EV
Sbjct: 587 RAAVQR--AHAEARERAAAGAREKAEKAAAEARERANAEV 624


>At5g52520.1 68418.m06516 tRNA synthetase class II (G, H, P and S)
           family protein similar to SP|P07814 Bifunctional
           aminoacyl-tRNA synthetase [Includes: Glutamyl-tRNA
           synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase);
           Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA
           ligase)] {Homo sapiens}; contains Pfam profiles PF00587:
           tRNA synthetase class II core domain (G, H, P, S and T),
           PF03129: Anticodon binding domain
          Length = 543

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 103 RIRPASGSLTSPASLLTPHSRFAGVLRIRAD 11
           R RP SG  T+P+   +P ++ + V R+R+D
Sbjct: 33  RNRPLSGFATAPSGTASPETKSSEVDRLRSD 63


>At4g00165.1 68417.m00017 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           protease inhibitor/seed storage/LTP family domain
           PF00234
          Length = 128

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 234 PGAAAAQSTPPPPKHAPQVCPR 299
           PGA      PPP K A   CPR
Sbjct: 27  PGATVKPCPPPPAKQATTKCPR 48


>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 24.2 bits (50), Expect(2) = 7.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 234 PGAAAAQSTPPPPKHAP 284
           P  A   S PPPP H+P
Sbjct: 743 PPPAPIYSPPPPPVHSP 759



 Score = 21.8 bits (44), Expect(2) = 7.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 258 TPPPPKHAPQVCP 296
           +PPPP H+P   P
Sbjct: 758 SPPPPVHSPPPPP 770


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,814,394
Number of Sequences: 28952
Number of extensions: 258616
Number of successful extensions: 1380
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)