Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0572
         (766 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.77 
SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.4  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    29   5.4  
SB_52186| Best HMM Match : IMPDH (HMM E-Value=0)                       28   9.5  
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 206 EDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKDPK-HALFL 334
           E+ + V KL D  L NKG  PH    N    ++E DPK H LF+
Sbjct: 341 EESVDVTKL-DYYLMNKGYIPHADRLNDTLHHYETDPKYHRLFI 383


>SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 110 SMVRFQS*SRLSSVCSPIVHQLSSRRDSRLCVS 12
           S +  +S S  SSVC  ++H+LS+ R   +C S
Sbjct: 430 SYIVCRSISYTSSVCRSVIHRLSANRSKTVCRS 462


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
 Frame = +1

Query: 367  LISVK*LGRVYLDDIMIISENIAILYGVIILTLIYIC-SINFVLLF*HIQSRNEI*FSFV 543
            +IS+  +  +++  I++I   I I+  +II+T+I I  +I F+++   I     I    +
Sbjct: 2154 IISIIVIIVIFIVIIIVIVLTITIIIAIIIVTIIVITINIIFIVIVIIISIIGIIIVIII 2213

Query: 544  FIIALFI 564
            FII +FI
Sbjct: 2214 FIIVIFI 2220


>SB_52186| Best HMM Match : IMPDH (HMM E-Value=0)
          Length = 876

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
 Frame = +2

Query: 146 LMTKDGKFKKDVALAKVPNAEDKLKVEKLIDACL------ANKGNSPHQ 274
           L +KD K +  V  A    AEDKL+VE LI A +      +++GNS +Q
Sbjct: 428 LASKDSKKQLLVGAAIGTRAEDKLRVEALIHAGVDVIILDSSQGNSAYQ 476


>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 808

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/61 (31%), Positives = 33/61 (54%)
 Frame = -1

Query: 325 SVLRVFLVVAFHIIPGCLVRAVAFVGQASVNQLLYFQFVFSIRHFSQSDVLLEFPVLGHQ 146
           SVL VF+V+   +IPG  V A  +V     N  + +++VF+     Q  ++L F +L  +
Sbjct: 26  SVLLVFMVLLIVMIPGTWVAAAIYVKHFQDN--VIWEYVFAGSCALQGILVLLFGLLDRE 83

Query: 145 L 143
           +
Sbjct: 84  I 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,221,317
Number of Sequences: 59808
Number of extensions: 422665
Number of successful extensions: 1017
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)