Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0572
(766 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-52|CAB16507.3| 512|Caenorhabditis elegans Hypothetical p... 31 0.68
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 29 2.7
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 2.7
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 2.7
Z49130-6|CAA88971.1| 387|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z81466-6|CAB03870.1| 545|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z75536-5|CAA99833.1| 545|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical pr... 28 8.4
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 28 8.4
U53151-5|AAB37068.1| 476|Caenorhabditis elegans Hypothetical pr... 28 8.4
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 28 8.4
AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA ... 28 8.4
>Z99281-52|CAB16507.3| 512|Caenorhabditis elegans Hypothetical
protein Y57G11C.5 protein.
Length = 512
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -3
Query: 392 RPSYLTLMRYGTVGLDYVFTRKERASGLSRGSISHNSR 279
RPS LT YG+ GL+ + K R +GL+R + +++ +
Sbjct: 160 RPSLLTTNGYGSAGLNATWIGKTRKAGLNRFACTYHKK 197
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = +2
Query: 14 KHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAK 193
KH AD + + D++L + K +++ LKK A L K KD K K++
Sbjct: 7282 KHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE----KDDKLKQEADAKL 7337
Query: 194 VPNAEDKLKVE 226
+DKLK E
Sbjct: 7338 KKEKDDKLKHE 7348
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +2
Query: 14 KHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAK 193
K AD + + D++L + K +++ LK+ A L K KD FK++
Sbjct: 7994 KQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKLQKE----KDDNFKQEANAKL 8049
Query: 194 VPNAEDKLKVEK 229
+DKLK EK
Sbjct: 8050 QKEKDDKLKQEK 8061
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = +2
Query: 14 KHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAK 193
KH AD + + D++L + K +++ LKK A L K KD K K++
Sbjct: 7302 KHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE----KDDKLKQEADAKL 7357
Query: 194 VPNAEDKLKVE 226
+DKLK E
Sbjct: 7358 KKEKDDKLKHE 7368
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +2
Query: 14 KHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAK 193
K AD + + D++L + K +++ LK+ A L K KD FK++
Sbjct: 8014 KQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKLQKE----KDDNFKQEANAKL 8069
Query: 194 VPNAEDKLKVEK 229
+DKLK EK
Sbjct: 8070 QKEKDDKLKQEK 8081
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = +2
Query: 14 KHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAK 193
KH AD + + D++L + K +++ LKK A L K KD K K++
Sbjct: 7302 KHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE----KDDKLKQEADAKL 7357
Query: 194 VPNAEDKLKVE 226
+DKLK E
Sbjct: 7358 KKEKDDKLKHE 7368
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +2
Query: 14 KHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAK 193
K AD + + D++L + K +++ LK+ A L K KD FK++
Sbjct: 8014 KQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKLQKE----KDDNFKQEANAKL 8069
Query: 194 VPNAEDKLKVEK 229
+DKLK EK
Sbjct: 8070 QKEKDDKLKQEK 8081
>Z49130-6|CAA88971.1| 387|Caenorhabditis elegans Hypothetical
protein T06D8.8 protein.
Length = 387
Score = 28.3 bits (60), Expect = 6.3
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Frame = +2
Query: 68 KLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNA--EDKLKVEKL--- 232
+L +++ PL+ +C+ I + TKD K K L+K+ N +DK+ V +L
Sbjct: 61 RLFVAEWELRVNPLQLVEICISIAQNIATKD-KQKSMEFLSKIGNVINKDKIAVARLHTG 119
Query: 233 -IDACLANK 256
I+A L NK
Sbjct: 120 EIEARLENK 128
>Z81466-6|CAB03870.1| 545|Caenorhabditis elegans Hypothetical
protein F18C12.3 protein.
Length = 545
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 89 KTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNAEDKLKVEK 229
K NE + A C+ K+QLM++ + KK + K + K K E+
Sbjct: 110 KLNNELVALRATCLTAKNQLMSRIVRQKKQLESKKSQKVDGKSKEER 156
>Z75536-5|CAA99833.1| 545|Caenorhabditis elegans Hypothetical
protein F18C12.3 protein.
Length = 545
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 89 KTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNAEDKLKVEK 229
K NE + A C+ K+QLM++ + KK + K + K K E+
Sbjct: 110 KLNNELVALRATCLTAKNQLMSRIVRQKKQLESKKSQKVDGKSKEER 156
>Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 241 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 363
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
>Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 241 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 363
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 26 DCLSETKADEQLVNKLKTGDFKTENEPLK 112
D +SE A ++ V+ + TG FK+ N+P+K
Sbjct: 390 DLVSELLAFKKKVDFIMTGSFKSANDPVK 418
>U53151-5|AAB37068.1| 476|Caenorhabditis elegans Hypothetical
protein T05B11.4 protein.
Length = 476
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -2
Query: 174 FLNFPSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTNCSSAFVSERQSALCFFKFS 1
F + + C L+ + R Y F +L VF +FTN F S R S C+ + S
Sbjct: 6 FFQIDNFLKICSLVEMQRIYQFILIIILLLLLVFDIFTNKPELFPSSRISP-CYTESS 62
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 26 DCLSETKADEQLVNKLKTGDFKTENEPLK 112
D +SE A ++ V+ + TG FK+ N+P+K
Sbjct: 427 DLVSELLAFKKKVDFIMTGSFKSANDPVK 455
>AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA
binding protein SYM-2 protein.
Length = 618
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 241 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 363
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,137,872
Number of Sequences: 27780
Number of extensions: 335489
Number of successful extensions: 974
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -