Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0572
         (766 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19230.2 68417.m02837 cytochrome P450 family protein cytochro...    31   0.64 
At5g17930.1 68418.m02102 MA3 domain-containing protein low simil...    31   1.1  
At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr...    29   2.6  
At5g17240.1 68418.m02020 SET domain-containing protein contains ...    29   3.4  
At4g02710.1 68417.m00366 kinase interacting family protein simil...    29   4.5  
At1g80410.1 68414.m09413 acetyltransferase-related low similarit...    29   4.5  
At5g31412.1 68418.m03722 hypothetical protein contains Pfam doma...    28   5.9  
At1g66130.1 68414.m07505 oxidoreductase N-terminal domain-contai...    28   5.9  
At2g37050.1 68415.m04546 leucine-rich repeat family protein / pr...    28   7.8  

>At4g19230.2 68417.m02837 cytochrome P450 family protein cytochrome
           P450, Arabidopsis thaliana; supported by cDNA:
           gi_15293092_gb_AY050980.1_
          Length = 484

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -3

Query: 326 ERASGLSRGSISHNSRLFGEGCCLCWPGKRQS 231
           ERA+G S G    +SR     C LCWPG R+S
Sbjct: 439 ERATGFSMG----HSRFPKTDCPLCWPGSRRS 466


>At5g17930.1 68418.m02102 MA3 domain-containing protein low
           similarity to SP|Q9P6R9 Cell cycle control protein cwf22
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF02847: MA3 domain
          Length = 707

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
 Frame = +2

Query: 23  ADCLSETKADE--QLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKV 196
           A+ ++ET   E  +    LK  + +  N   +K   C+++ S+       F+K + L  +
Sbjct: 479 AEDIAETMDAEVVEAQKMLKLAEAQRMNTDSRKAIFCVIMSSEDYID--AFEKLLRL-DL 535

Query: 197 PNAEDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKDPKHAL 328
           P  +D+  +  L++ CL  K  +   T      C H+K+ K  L
Sbjct: 536 PGKQDREIMRVLVECCLQEKAFNKFYTVLASKLCEHDKNHKFTL 579


>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
           protein precursor - Plasmodium falciparum, PIR2:A54514
          Length = 504

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +2

Query: 8   LKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGK 166
           +K+H   CL+  + DE   N L+T + K +  P+K+ A   L K     KDGK
Sbjct: 83  VKQHLVQCLAGAENDETSENSLET-EKKDDVTPVKEAA--ELSKEHTTKKDGK 132


>At5g17240.1 68418.m02020 SET domain-containing protein contains
           Pfam profile PF00856: SET domain
          Length = 491

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +2

Query: 107 LKKYALCMLI-KSQLMTKDGKFKKDVALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAW 283
           LKK  L + + +  LMT +    KD+ L+   N  + L   +++  CL  + +   ++ W
Sbjct: 57  LKKGELVLKVPRKALMTTESIIAKDLKLSDAVNLHNSLSSTQILSVCLLYEMSKEKKSFW 116

Query: 284 NYVKCYH 304
            Y   +H
Sbjct: 117 -YPYLFH 122


>At4g02710.1 68417.m00366 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1111

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 347 DYVFTRKERASGLSRGSISHNSRLFGEGCCL 255
           DYVFT +E A  +S+G+   +  L  EG CL
Sbjct: 781 DYVFTHRESAGEVSKGADLMDEFLKLEGMCL 811


>At1g80410.1 68414.m09413 acetyltransferase-related low similarity
           to acetyltransferase Tubedown-1 [Mus musculus]
           GI:8497318, N-TERMINAL ACETYLTRANSFERASE GB:P12945 from
           (Saccharomyces cerevisiae); contains Pfam profile
           PF00515 TPR Domain
          Length = 897

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/38 (36%), Positives = 26/38 (68%)
 Frame = -2

Query: 591 KKSPRSIKRDKQSYDEHKRKLNFISRLNMLKQQNKIYR 478
           KK P+ +  DK SY E  ++++ +S++  L++ NK+YR
Sbjct: 214 KKEPKIV--DKLSYKE--QEVSLLSKVGRLEEANKLYR 247


>At5g31412.1 68418.m03722 hypothetical protein contains Pfam domain,
           PF04937: Protein of unknown function (DUF 659)
          Length = 433

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +2

Query: 17  HRADCLSETKADEQLVNKLKT-GDFKTENEPLKKYALCMLIKSQLMTKD-GKFKKDVALA 190
           H  D + E  +    + K++T GD+K EN  L +Y  C+L    +  +D G   K + LA
Sbjct: 227 HTVDLMLEAISKLPKMGKMQTFGDYKGENLFLNRYESCVLEWCDVCVEDFGPLMKLLRLA 286

Query: 191 KVPN 202
              N
Sbjct: 287 DGEN 290


>At1g66130.1 68414.m07505 oxidoreductase N-terminal
           domain-containing protein similar to AX110P [Daucus
           carota] GI:285739; contains Pfam profile PF01408:
           Oxidoreductase family NAD-binding Rossmann fold
          Length = 364

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 170 KKDVALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAW 283
           KK   L + P A+D  ++EK+++AC  N       T W
Sbjct: 95  KKKHVLVEKPPAQDATELEKIVEACEYNGVQFMDGTIW 132


>At2g37050.1 68415.m04546 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 934

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 622 AASCLSLYEMKEITKKHQTR 563
           AA C +LYE++E TKK + R
Sbjct: 590 AAHCFTLYEIEEATKKFEKR 609


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,963,544
Number of Sequences: 28952
Number of extensions: 298329
Number of successful extensions: 708
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)