Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0571
(724 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ... 58 1e-09
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 48 1e-06
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce... 43 5e-05
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 28 1.2
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 27 2.7
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 26 4.7
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 4.7
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch... 25 8.3
>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 376
Score = 58.4 bits (135), Expect = 1e-09
Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 8/146 (5%)
Frame = +3
Query: 78 VTLATN--DSYGLGALVLAHSLRR---AGSVYPAVALITPTVSEAMRDRLRAVFSEVVTV 242
+TL T+ D Y VL + L+ S YP L+ V E +RLR +E++ V
Sbjct: 81 LTLPTSEHDVYFNATRVLVYKLKHHPETKSKYPVHVLVMKGVDEWKIERLRLDGAEIIMV 140
Query: 243 DVLDSRDAAHLAL---LQRPELGITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFERE 413
D + + D L + FTK+ + TQ++K LD+D+LV++N D++F+
Sbjct: 141 DQIKTEDLIESGLSIGMGSYRYQYMFTKLSVFEQTQFDKVCILDSDLLVLKNMDDIFDTP 200
Query: 414 ELSAAPDVGWPDCFNSGVFVFKPSNE 491
+ +P PD F+ +F KP +E
Sbjct: 201 YVYESP--AEPDMFSFPIFK-KPDDE 223
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 48.0 bits (109), Expect = 1e-06
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Frame = +3
Query: 96 DSYGLGALVLAHSL---RRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDVLDSR-- 260
D Y +L H L + S YP V L + + D+L+ + V VD L +
Sbjct: 80 DWYYNSTRLLVHRLVKFKPTKSKYPVVVLAMKGIDQWKLDQLQEDGAIVKVVDPLYAHEV 139
Query: 261 --DAAHLALLQRPELGITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPD 434
D +ALL + FTK+ + + +Y++ FLD+DIL I+ D++F+ +LS + D
Sbjct: 140 VDDVNDIALLDS-RWSMMFTKLRVFEMYEYDRICFLDSDILPIKKMDKVFDVHQLSYSKD 198
Score = 31.5 bits (68), Expect = 0.13
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +3
Query: 447 DCFNSGVFVFKPSNETFEKLIQFAQQRGSFDGG---DQGLLN 563
D FN+G+FVFKP +++L+ A+ +D +Q LLN
Sbjct: 256 DYFNAGLFVFKPLKAHYKRLMALARFPKLYDNANMMEQSLLN 297
>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 42.7 bits (96), Expect = 5e-05
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Frame = +3
Query: 87 ATNDSYGLGAL-VLAHSLR---RAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDVLD 254
+T + Y A VL H L+ S YP L V E +R R + V+ +D +
Sbjct: 79 STEEDYYFNATRVLIHRLKYHPTTKSKYPIHILALRGVDEWKIERFRKDGASVIVIDPIA 138
Query: 255 SRDAAHLALLQRPELGIT----FTKIHCWNLTQYEKCVFLDADILVIQNCDELFE 407
S D + E+ F+K+ + Q++K +D+DIL+++N D++F+
Sbjct: 139 SSDIVYDTSSFSQEISARYEQMFSKLRIFEQIQFDKICVIDSDILIMKNIDDIFD 193
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 159 PAVALITPTVSEAMRDRLRAVFSEVVTVDVLDSR 260
P V + +P + D L A +++V+T+DVLD R
Sbjct: 1438 PTVKVSSPRCELHLDDLLSAQYNKVLTLDVLDGR 1471
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +3
Query: 147 GSVYPAVA-LITPTVSEAMRDRLR-AVFSEVVTVDVLDSRDAAHLALLQRPELGITFTKI 320
G + P +A L T VSE D+LR ++++ V++ + + + + + K
Sbjct: 175 GFLLPHLASLTTKNVSEPELDKLRHSLYNWWVSILRRLQSNISTSERITYTKAILAIAKH 234
Query: 321 HCWNLTQYEKCVFLDADILV 380
HCWN ++ ++L+ +++
Sbjct: 235 HCWNKVEHSALLYLEHQLIL 254
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 132 SLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVT 239
+LR+A + P V + TV+E +RD V + VVT
Sbjct: 112 NLRKALTSTPNVTVTEATVNELLRDETGEVITGVVT 147
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 624 VTTAAFYSYLPALKHYGQNLKIIHFIGA 707
+T F + +P+L+H G+ L+ I F GA
Sbjct: 212 LTRQVFINSVPSLQHMGELLQCIAFTGA 239
>SPAC25B8.15c |||wybutosine biosynthesis protein
Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 237
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 496 KVSFEGLKTKTPELKQSGHPTS 431
K EGLK+ P+ GHP S
Sbjct: 15 KEILEGLKSSVPDASPKGHPDS 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,650
Number of Sequences: 5004
Number of extensions: 55589
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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