Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0571
(724 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0376 - 20754386-20755392,20755683-20756320,20756433-207566... 109 3e-24
01_06_1550 + 38191957-38192054,38193084-38193284,38193456-381940... 108 4e-24
03_01_0598 + 4410722-4410988,4411112-4411745,4414612-4415555 99 2e-21
02_05_0007 + 24918163-24918420,24919360-24919410,24919411-249194... 89 3e-18
02_04_0222 - 21034183-21035920,21036484-21036687,21037323-21037345 86 2e-17
04_04_0516 + 25833801-25834046,25834412-25834532,25834636-258348... 79 5e-15
03_02_0800 + 11337206-11337532,11337634-11337957,11338060-113381... 68 7e-12
10_08_0883 + 21279913-21280235,21281066-21281327,21281998-212821... 64 1e-10
07_03_1743 - 29167078-29167290,29167389-29168159 62 6e-10
04_04_0739 - 27693768-27694305,27694765-27694912,27694987-276951... 52 4e-07
02_05_1197 - 34908382-34908582,34908664-34908837,34909239-349093... 30 1.6
10_08_0935 + 21670372-21671396,21672057-21672987 29 3.7
07_01_0059 - 439518-439646,439767-439885,440003-440241,440320-44... 28 6.5
06_02_0308 + 14124373-14124706,14124888-14124910 28 8.6
01_05_0513 - 22864657-22867899 28 8.6
>05_04_0376 -
20754386-20755392,20755683-20756320,20756433-20756627,
20757730-20757795,20757942-20758007,20758402-20758445
Length = 671
Score = 109 bits (261), Expect = 3e-24
Identities = 76/222 (34%), Positives = 118/222 (53%), Gaps = 5/222 (2%)
Frame = +3
Query: 72 AWVTLATNDS-YGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDV 248
A+ T+ + S Y GA+ A S+R+AGS V L+ T+S+ R L A +V +
Sbjct: 348 AYATILHSASEYVCGAISAAQSIRQAGSTRDLVILVDDTISDHHRKGLEAAGWKVRVIQR 407
Query: 249 LDSRDAAHLALLQRPELGITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAA 428
+ + A A + ++K W LT Y+K +F+DAD+L+++N D LF E++A
Sbjct: 408 IRNPKAERDAYNEW-----NYSKFRLWQLTDYDKIIFIDADLLILRNVDFLFAMPEITAT 462
Query: 429 PDVGWPDCFNSGVFVFKPSNETFEKLIQFAQQRGSFDGGDQGLLNSFFSDWAHGDINKHL 608
+ FNSGV V +PSN TF+ L+ + S++GGDQG LN F+ W H I KH+
Sbjct: 463 GNNA--TLFNSGVMVIEPSNCTFQLLMDHINEITSYNGGDQGYLNEIFT-WWH-RIPKHM 518
Query: 609 PFLYNVTTAAFYS-YLPALKHYGQN---LKIIHFIGAGKPWL 722
FL + S + +G + L ++H++G KPWL
Sbjct: 519 NFLKHFWEGDDDSAKAKKTELFGADPPILYVLHYLGM-KPWL 559
>01_06_1550 +
38191957-38192054,38193084-38193284,38193456-38194090,
38194398-38195419
Length = 651
Score = 108 bits (260), Expect = 4e-24
Identities = 75/222 (33%), Positives = 117/222 (52%), Gaps = 5/222 (2%)
Frame = +3
Query: 72 AWVTLATNDS-YGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDV 248
A+ T+ + S Y GA+ A S+R+AGS V L+ T+S R L A +V +
Sbjct: 323 AYATILHSASEYVCGAITAAQSIRQAGSTRDFVILVDETISNHHRKGLEAAGWKVRIIQR 382
Query: 249 LDSRDAAHLALLQRPELGITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAA 428
+ + A A + ++K W LT Y+K +F+DAD+L+++N D LF E++A
Sbjct: 383 IRNPKAERDAYNEW-----NYSKFRLWQLTDYDKIIFIDADLLILRNVDFLFAMPEITAT 437
Query: 429 PDVGWPDCFNSGVFVFKPSNETFEKLIQFAQQRGSFDGGDQGLLNSFFSDWAHGDINKHL 608
+ FNSGV V +PSN TF+ L+ + S++GGDQG LN F+ W H I KH+
Sbjct: 438 GNNA--TLFNSGVMVIEPSNCTFQLLMDHINEITSYNGGDQGYLNEIFT-WWH-RIPKHM 493
Query: 609 PFLYNVTTAAFYSY-LPALKHYGQN---LKIIHFIGAGKPWL 722
FL + + + +G + L ++H++G KPWL
Sbjct: 494 NFLKHFWEGDEEEVKVKKTRLFGADPPILYVLHYLGL-KPWL 534
>03_01_0598 + 4410722-4410988,4411112-4411745,4414612-4415555
Length = 614
Score = 99 bits (238), Expect = 2e-21
Identities = 79/243 (32%), Positives = 121/243 (49%), Gaps = 4/243 (1%)
Frame = +3
Query: 3 VRDIYR*LELSHETTPGFIMSNRAWVT-LATNDSYGLGALVLAHSLRRAGSVYPAVALIT 179
+++++ EL+ A+ T L ++D+Y GA+VLA S+RRAGS V L
Sbjct: 302 IQEVFNVSELTAAAATAGRPRREAYATVLHSSDTYLCGAIVLAQSIRRAGSTRDLVLLHD 361
Query: 180 PTVSEAMRDRLRAVFSEVVTVDVLDSRDAAHLALLQRPELGITFTKIHCWNLTQYEKCVF 359
TVS+ L A + + + A + ++K W LT Y++ VF
Sbjct: 362 HTVSKPALAALVAAGWTPRKIKRIRNPRAERGTYNE-----YNYSKFRLWQLTDYDRVVF 416
Query: 360 LDADILVIQNCDELFEREELSAAPDVGWPDCFNSGVFVFKPSNETFEKLIQFAQQRGSFD 539
+DADILV+++ D LF +L+A + G FNSGV V +PS TF+ LI+ + S++
Sbjct: 417 VDADILVLRDLDALFGFPQLTAVGNDG--SLFNSGVMVIEPSQCTFQSLIRQRRTIRSYN 474
Query: 540 GGDQGLLNSFFSDWAHGDINKHLPFLYNV---TTAAFYSYLPALKHYGQNLKIIHFIGAG 710
GGDQG LN F W H + + + +L N TTA + + IH++G
Sbjct: 475 GGDQGFLNEVFV-WWH-RLPRRVNYLKNFWANTTAERALKERLFRADPAEVWSIHYLGL- 531
Query: 711 KPW 719
KPW
Sbjct: 532 KPW 534
>02_05_0007 +
24918163-24918420,24919360-24919410,24919411-24919480,
24919645-24919830,24920127-24920275,24921310-24921417,
24921501-24921638,24922574-24922853,24922924-24923047,
24923197-24923312,24923612-24923619
Length = 495
Score = 89.0 bits (211), Expect = 3e-18
Identities = 68/231 (29%), Positives = 112/231 (48%), Gaps = 13/231 (5%)
Frame = +3
Query: 66 NRAWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVD 245
+ A+VTL D + LG VL S+R + V L++ VSE R L A V +
Sbjct: 37 DEAYVTLLYGDEFVLGVRVLGKSIRDTDTSRDLVVLVSDGVSEYSRKLLEADGFIVKHIT 96
Query: 246 VLDSRDAAHLALLQRPELGITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSA 425
+L A+ ++ +TK+ +N+T Y+K +LDAD +V+++ +++F + A
Sbjct: 97 LL-----ANPNQVRPTRFWGVYTKLKIFNMTSYKKVAYLDADTIVVKSIEDIFNCGKFCA 151
Query: 426 APDVGWPDCFNSGVFVFKPSNETFEKLIQFAQQRGSFDGGDQGLLNSFFSDWAHGDI--- 596
++ + NSGV V +PS F ++ S+ GGDQG LNS+++D+A+ +
Sbjct: 152 --NLKHSERMNSGVMVVEPSETLFNDMMDKVNSLPSYTGGDQGFLNSYYADFANSRVYEP 209
Query: 597 NK---------HLPFLYNVTTAAFYSYLPALKHYGQNLKIIHF-IGAGKPW 719
NK L LYN Y + L++IH+ +G KPW
Sbjct: 210 NKPTTPEPETQRLSTLYN-ADVGLYMLANKWMVDEKELRVIHYTLGPLKPW 259
>02_04_0222 - 21034183-21035920,21036484-21036687,21037323-21037345
Length = 654
Score = 86.2 bits (204), Expect = 2e-17
Identities = 66/185 (35%), Positives = 93/185 (50%), Gaps = 11/185 (5%)
Frame = +3
Query: 84 LATNDSYGLGALVLAHSLRRAG-SVYPA------VALITPTVSEAMRDRLRAVFSEVVTV 242
L + + Y GALV A S+R A S P+ VAL+ T+S R L A +V +
Sbjct: 321 LHSEELYACGALVAAQSIRMASASGAPSEPERDMVALVDETISARHRGALEAAGWKVRAI 380
Query: 243 DVLDSRDAAHLALLQRPELGITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELS 422
+ + AA A + ++K W+LT+Y++ VFLDAD+LV + LF E+S
Sbjct: 381 RRVRNPRAAADAYNEW-----NYSKFWLWSLTEYDRVVFLDADLLVQRPMSPLFAMPEVS 435
Query: 423 AAPDVGWPDCFNSGVFVFKPSNETFEKLIQFAQQRGSFDGGDQGLLNSFFSDW----AHG 590
A + G FNSGV V +P T L+ S++GGDQG LN FS W +H
Sbjct: 436 ATANHG--TLFNSGVMVVEPCGCTLRLLMDHIADIDSYNGGDQGYLNEVFSWWHRLPSHA 493
Query: 591 DINKH 605
+ KH
Sbjct: 494 NFMKH 498
>04_04_0516 +
25833801-25834046,25834412-25834532,25834636-25834821,
25834918-25834944,25836203-25836351,25836553-25836602,
25837181-25837289,25837395-25837532,25838184-25838463,
25838533-25838656,25838994-25839003
Length = 479
Score = 78.6 bits (185), Expect = 5e-15
Identities = 55/187 (29%), Positives = 98/187 (52%), Gaps = 9/187 (4%)
Frame = +3
Query: 63 SNRAWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTV 242
+ A+VTL D + LG VL S+R G+ V L++ VS+ R L+A V +
Sbjct: 32 TEEAYVTLLYGDEFVLGVRVLGKSIRDTGTRRDLVVLVSDGVSDYSRKLLQADGWIVSHI 91
Query: 243 DVLDSRDAAHLALLQRPELGITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELS 422
+L + + + G+ +TK+ +N+T Y K V+LDAD +V+++ ++LF+ +
Sbjct: 92 TLLANPNQVR----PKRFWGV-YTKLKIFNMTSYRKVVYLDADTVVVKSIEDLFKCGKFC 146
Query: 423 AAPDVGWPDCFNSGVFVFKPSNETFEKLIQFAQQRGSFDGG---------DQGLLNSFFS 575
++ + NSGV V +PS F+ +++ S+ GG DQG LNS+++
Sbjct: 147 G--NLKHSERMNSGVMVVEPSETVFKDMMRQIDTLPSYTGGCNSVECLYSDQGFLNSYYA 204
Query: 576 DWAHGDI 596
D+A+ +
Sbjct: 205 DFANSHV 211
>03_02_0800 +
11337206-11337532,11337634-11337957,11338060-11338194,
11338280-11338519
Length = 341
Score = 68.1 bits (159), Expect = 7e-12
Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Frame = +3
Query: 63 SNRAWVT-LATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVT 239
+ RA+VT LA + Y G + LA LR+ GS YP V + P V E+ R L + V
Sbjct: 21 ATRAYVTFLAGDGDYWKGVVGLAKGLRKVGSAYPLVVAVLPDVPESHRRILISQGCIVRE 80
Query: 240 VD-VLDSRDAAHLALLQRPELGITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFE 407
++ V + A+ I ++K+ W +YE+ V+LDADI V N DELFE
Sbjct: 81 IEPVYPPENQTQFAMAYYV---INYSKLRIWEFVEYERMVYLDADIQVFDNIDELFE 134
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Frame = +3
Query: 453 FNSGVFVFKPSNETFEKLIQFAQQRGSFDGGDQGLLNSFFSDWAHGDINKHLPFLYNVTT 632
FN+G+FV +PS T + L+ + +Q LN FF + K +P +YN+
Sbjct: 185 FNAGMFVHEPSMATAKSLLDTLRVTTPTPFAEQDFLNMFFREQ-----YKPIPLIYNLVL 239
Query: 633 AAFYSYLPALKHYGQNLKIIHFIGAG-KPW 719
A + + ++ + +K++H+ AG KPW
Sbjct: 240 AMLWRHPENVQL--EKVKVVHYCAAGSKPW 267
>10_08_0883 +
21279913-21280235,21281066-21281327,21281998-21282199,
21282289-21282436,21282541-21283084
Length = 492
Score = 63.7 bits (148), Expect = 1e-10
Identities = 47/158 (29%), Positives = 80/158 (50%), Gaps = 5/158 (3%)
Frame = +3
Query: 120 VLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSE----VVTVDVLDSRDAAHLALLQ 287
V+ SL R G+ V + + V D +RA+ E VV V+ + + ++L +
Sbjct: 78 VMMRSLARIGADADRVLIASADVPA---DWVRAMREEDGMRVVLVENMKNPYESNLGGIN 134
Query: 288 RPELGITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPDVGWPDCFNSGV 467
R +T K++ W L YE+ V +D+D + +Q DELF+ + A P F++G+
Sbjct: 135 R-RFKLTLNKLYAWTLVDYERVVMIDSDNIFLQKTDELFQCGQFCAV--FINPCYFHTGL 191
Query: 468 FVFKPSNETFEKLIQFAQ-QRGSFDGGDQGLLNSFFSD 578
FV +PS + F+ ++ + R + DG DQG L + D
Sbjct: 192 FVLQPSMDVFKGMLHDLEIGRANSDGADQGFLVGCYPD 229
>07_03_1743 - 29167078-29167290,29167389-29168159
Length = 327
Score = 61.7 bits (143), Expect = 6e-10
Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 4/120 (3%)
Frame = +3
Query: 69 RAWVT-LATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRL---RAVFSEVV 236
RA+VT LA + Y G + LA LRR S YP V + P V R +L V E+
Sbjct: 18 RAYVTFLAGDGDYWKGVVGLAKGLRRVRSAYPLVVAVLPDVPGEHRRKLVEQGCVVREIQ 77
Query: 237 TVDVLDSRDAAHLALLQRPELGITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREE 416
V +S+ +A I ++K+ W +YE+ V+LDADI V N D LF+ ++
Sbjct: 78 PVYPPESQTQFAMAYYV-----INYSKLRIWEFVEYERMVYLDADIQVFDNIDHLFDLDK 132
Score = 37.9 bits (84), Expect = 0.008
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Frame = +3
Query: 444 PDCFNSGVFVFKPSNETFEKLIQFAQQRGSFDGGDQGLLNSFFSDWAHGDINKHLPFLYN 623
P FN+G+FV +P T + L+ +Q LN FF + K +P +YN
Sbjct: 177 PLYFNAGMFVHEPGLGTAKDLLDALVVTPPTPFAEQDFLNMFFREQ-----YKPIPNVYN 231
Query: 624 VTTAAFYSYLPALKHYGQNLKIIHFIGAG-KPW 719
+ A + + P Q +K++H+ AG KPW
Sbjct: 232 LVLAMLWRH-PENVDLDQ-VKVVHYCAAGSKPW 262
>04_04_0739 -
27693768-27694305,27694765-27694912,27694987-27695188,
27695802-27695864,27695865-27696120,27697811-27697953
Length = 449
Score = 52.4 bits (120), Expect = 4e-07
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 22/175 (12%)
Frame = +3
Query: 120 VLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDVLDSRDAAHLALLQRPEL 299
V+ SL R GS V + + V L+ +VV+V+ L + R +L
Sbjct: 18 VMMRSLGRLGSDADRVVIASVDVPPRWVQALKDDGVKVVSVENLKNPYEKQGNFNMRFKL 77
Query: 300 GITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPDVGWPDCFNSGVFVFK 479
T K++ W+L Y++ V LD+D + +QN DELF+ + A P F++G+FV +
Sbjct: 78 --TLNKLYAWSLVSYDRVVMLDSDNIFLQNTDELFQCGQFCAV--FINPCIFHTGLFVLQ 133
Query: 480 ---------------------PSNETFEKLI-QFAQQRGSFDGGDQGLLNSFFSD 578
PS + F+ ++ + A R + DG DQG L S+F D
Sbjct: 134 VGLLAIWVSPFFCKISFNFLHPSMDVFKNMLHELAVGRDNPDGADQGFLASYFPD 188
>02_05_1197 -
34908382-34908582,34908664-34908837,34909239-34909337,
34909444-34909644,34910229-34910336,34910498-34910882,
34911132-34911584,34911868-34912094,34912211-34912270
Length = 635
Score = 30.3 bits (65), Expect = 1.6
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = +3
Query: 24 LELSHETTPGFIMSNR-AWVTLATNDSYGLGALVLAHSLRRAGSV-YPAVALITPTV-SE 194
+ L+H TTP + NR + +A+N LGA H LR A +V P ++L T SE
Sbjct: 299 VHLTHLTTPESVFHNRLGFAAVASNP---LGAAASGHLLRAASAVASPLLSLFASTFRSE 355
Query: 195 AMR-DRL 212
A R D+L
Sbjct: 356 ANRLDKL 362
>10_08_0935 + 21670372-21671396,21672057-21672987
Length = 651
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 565 HSSL--TGRTATSTSIFPSCTTLQLRLSTHI 651
HSS+ +G AT TSI PSCT L T +
Sbjct: 144 HSSIDSSGAAATVTSIAPSCTVTSLSAKTSV 174
>07_01_0059 -
439518-439646,439767-439885,440003-440241,440320-440376,
440480-440566,440664-441208,441967-442026,443552-443935,
444049-444114
Length = 561
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +3
Query: 573 SDWAHGDINKHLPFLYN---VTTAAFYSYLPALKHYGQNLKIIHFIGAG 710
+ +A+G I L FL VT ++ LP + H+G +H++G G
Sbjct: 245 AQFAYGFIQCTLRFLQTQSVVTPLVVFALLPLVLHFGITHAFVHYLGFG 293
>06_02_0308 + 14124373-14124706,14124888-14124910
Length = 118
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 114 ALVLAHSLRRAGSVYPAVALITPTVSEA-MRDRLRAVF 224
+LVL L+ G + VA + P +SEA +R R +A+F
Sbjct: 25 SLVLLQQLQLLGVLVVVVAGVAPGISEAQVRSRFKAIF 62
>01_05_0513 - 22864657-22867899
Length = 1080
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 153 PSRRGGANGPAPELPSRRSRLWPELP 76
P GG N P PE+P R P++P
Sbjct: 172 PEGGGGDNAPPPEVPPEAPRDLPDIP 197
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,020,267
Number of Sequences: 37544
Number of extensions: 395312
Number of successful extensions: 1205
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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