Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0571
(724 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47587| Best HMM Match : Glyco_transf_8 (HMM E-Value=0.004) 171 4e-43
SB_16471| Best HMM Match : Glyco_transf_8 (HMM E-Value=5.5e-13) 92 4e-19
SB_22899| Best HMM Match : Glyco_transf_8 (HMM E-Value=9.5e-15) 92 4e-19
SB_32366| Best HMM Match : Kinesin (HMM E-Value=0) 79 5e-15
SB_24310| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 8e-15
SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15) 77 1e-14
SB_1969| Best HMM Match : Glyco_transf_8 (HMM E-Value=6.3e-09) 70 2e-12
SB_6251| Best HMM Match : NMU (HMM E-Value=5.7) 40 0.002
SB_32913| Best HMM Match : TSP_1 (HMM E-Value=1.4e-16) 31 1.2
SB_41099| Best HMM Match : VWA (HMM E-Value=0) 29 2.9
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33) 29 2.9
SB_47133| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_12440| Best HMM Match : 7tm_1 (HMM E-Value=0.0003) 28 6.7
SB_49696| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_47587| Best HMM Match : Glyco_transf_8 (HMM E-Value=0.004)
Length = 114
Score = 171 bits (417), Expect = 4e-43
Identities = 75/112 (66%), Positives = 93/112 (83%)
Frame = +3
Query: 204 DRLRAVFSEVVTVDVLDSRDAAHLALLQRPELGITFTKIHCWNLTQYEKCVFLDADILVI 383
++L V+ + TVD LDS+D A+LALL RPELGITFTKI CWNLT Y+KCVF+DAD+LV+
Sbjct: 2 EQLLRVWDHLETVDPLDSQDDANLALLSRPELGITFTKIRCWNLTHYQKCVFMDADMLVL 61
Query: 384 QNCDELFEREELSAAPDVGWPDCFNSGVFVFKPSNETFEKLIQFAQQRGSFD 539
QNCDELF+R ELSA PD+GWPDCFNSG+FVF+PS T + L+++A GSFD
Sbjct: 62 QNCDELFDRCELSAVPDIGWPDCFNSGMFVFEPSRATHKALLKYAIDHGSFD 113
>SB_16471| Best HMM Match : Glyco_transf_8 (HMM E-Value=5.5e-13)
Length = 310
Score = 92.3 bits (219), Expect = 4e-19
Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 7/192 (3%)
Frame = +3
Query: 72 AWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDVL 251
AW+T ND + L ALVL +SL++ +A ++ V+ R+ LR V EV + L
Sbjct: 91 AWLTALVNDDFALPALVLGYSLQKFSCQKNMIAFVSEDVTSQTREALRKVGWEVQQHERL 150
Query: 252 DSRDAAHLALLQRPELGI--TFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSA 425
D + G T T+ H W TQ+ K V+LD D + + N DELF+ + A
Sbjct: 151 DCDWLQRKLGKKETHEGYIGTHTRFHAWGFTQFSKIVYLDPDYMPMTNIDELFDVDSEFA 210
Query: 426 APDVGWP----DCFNSGVFVFKPSNETFEKLIQFAQQRGSFD-GGDQGLLNSFFSDWAHG 590
A P CFN+G+ VF+P N + ++++ G + DQ LL +++D
Sbjct: 211 ASVCSRPGVLDPCFNAGMLVFRPENRSKKEIMDLWFGTGKYHCANDQVLLWHYYAD---K 267
Query: 591 DINKHLPFLYNV 626
+ LP+ YNV
Sbjct: 268 GLYTALPYAYNV 279
>SB_22899| Best HMM Match : Glyco_transf_8 (HMM E-Value=9.5e-15)
Length = 847
Score = 92.3 bits (219), Expect = 4e-19
Identities = 62/192 (32%), Positives = 92/192 (47%), Gaps = 8/192 (4%)
Frame = +3
Query: 75 WVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDVLD 254
W++ ND Y + A+VL HS++ V + L++ VS+A L V V +D
Sbjct: 161 WLSALVNDEYVIPAVVLGHSIKTLSCVKKMLVLVSDEVSKASIHALERTGWSVKLVTAMD 220
Query: 255 SRDAAHLALLQRPELGI--TFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAA 428
R GI T T+ H WN TQY K ++ D D +++ N DELF E AA
Sbjct: 221 CRWLERKQGHMPASKGILGTHTRFHAWNYTQYSKIIYADPDYMLLSNMDELFHLSEDFAA 280
Query: 429 PD---VGWPD-CFNSGVFVFKPSNETFEKLIQ--FAQQRGSFDGGDQGLLNSFFSDWAHG 590
+ G D CFN+G+ VF+PS + ++ +++ + DQ LL ++D
Sbjct: 281 AECARAGMVDPCFNAGLLVFRPSYKDYKAIMENWWTISLSDTCPNDQVLLWHLYADTGRW 340
Query: 591 DINKHLPFLYNV 626
K LPF YNV
Sbjct: 341 ---KPLPFAYNV 349
>SB_32366| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 1492
Score = 78.6 bits (185), Expect = 5e-15
Identities = 63/213 (29%), Positives = 101/213 (47%), Gaps = 29/213 (13%)
Frame = +3
Query: 75 WVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDV-- 248
W+++ ND Y + A+VL H++R V ++ VS++ + L + V+ +V
Sbjct: 1069 WLSVLVNDEYVIPAVVLGHTIRVFSCVKTMTVFVSNEVSKSGQKALEKTMTVFVSNEVSK 1128
Query: 249 ---------------LDSRDAAHLALLQRPELGI------TFTKIHCWNLTQYEKCVFLD 365
++S D+ + EL I T T+ H WN T Y K ++ D
Sbjct: 1129 CGQKALEKFGWSVKEVESMDSHWMEKKLGKELSINDGIIGTHTRFHAWNYTHYRKIIYAD 1188
Query: 366 ADILVIQNCDELFE-REELSAA--PDVGWPD-CFNSGVFVFKPSNETFEKLIQFAQQRGS 533
DI+++ N DELF +E +AA G D CFN+G+ VFKPS+ +E +++
Sbjct: 1189 PDIMLMSNMDELFAIPDEFAAAYCGRSGMVDPCFNAGLLVFKPSHHDYEMIMKMWHHVSQ 1248
Query: 534 FDG--GDQGLLNSFFSDWAHGDINKHLPFLYNV 626
D DQ LL +++D + K L F YNV
Sbjct: 1249 VDACPNDQRLLWHYYAD---RGLWKPLSFAYNV 1278
>SB_24310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 77.8 bits (183), Expect = 8e-15
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Frame = +3
Query: 96 DSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDVLDSRDAAHL 275
D Y GAL +AHSLR + + V ++TP V+ R LR V+ +V+ V + + L
Sbjct: 4 DGYAAGALAVAHSLRMVQTKHDLVCMVTPDVTNPTRRHLRVVYDDVIEVPYIRQKCRLFL 63
Query: 276 A----LLQRPELGITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFE 407
+ + + +FTK +C NL QYE+ +F+DAD++V N D+LFE
Sbjct: 64 SPDQSRMYNDWIEFSFTKWNCLNLVQYERVMFIDADMVVKVNSDDLFE 111
>SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)
Length = 582
Score = 77.4 bits (182), Expect = 1e-14
Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Frame = +3
Query: 63 SNRAWVTLAT-NDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVT 239
S AWVTL D Y GAL +A SLR + Y V ++TP V+ R L ++ V+
Sbjct: 257 SRCAWVTLVMLGDGYAAGALAVAQSLRMVQTKYDLVCMVTPDVTHPTRRHLCVMYDHVIE 316
Query: 240 VDVLDSRD----AAHLALLQRPELGITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFE 407
V + R + + + + +FTK +C NL QYE+ +F+DAD++V N D+LFE
Sbjct: 317 VPYIQHRCRKLWSEKQSRMYDDWIEFSFTKWNCLNLVQYERVMFIDADMVVKVNSDDLFE 376
>SB_1969| Best HMM Match : Glyco_transf_8 (HMM E-Value=6.3e-09)
Length = 347
Score = 70.1 bits (164), Expect = 2e-12
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Frame = +3
Query: 63 SNRAWVTLAT-NDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVT 239
S AWVTL D Y GAL +AHSLRR + + V ++TP V+ + L V+ V+
Sbjct: 45 SRYAWVTLVMCGDGYAAGALAVAHSLRRVETRHDLVYMVTPDVTHSTYRHLCVVYDHVIE 104
Query: 240 VDVLD----SRDAAHLALLQRPELGITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFE 407
V + + + + +FTK +C L YE+ +F+DAD++V +N D+LFE
Sbjct: 105 VQYIQHPCRRLKSEKQQRMYNDWIESSFTKWNCLKL-DYERVLFIDADMIVKENSDDLFE 163
>SB_6251| Best HMM Match : NMU (HMM E-Value=5.7)
Length = 186
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Frame = +3
Query: 387 NCDELFEREELSAAPDVGWPD----CFNSGVFVFKPSNETFEKLIQFAQQRGSFD-GGDQ 551
N DELF+ + AA P CFN+G+ VF+P N + ++++ G + DQ
Sbjct: 5 NIDELFDVDSEFAASVCSRPGVLDPCFNAGMLVFRPENRSKKEIMDLWFGTGKYHCANDQ 64
Query: 552 GLLNSFFSDWAHGDINKHLPFLYNV 626
LL +++D + LP+ YNV
Sbjct: 65 VLLWHYYAD---KGLYTALPYAYNV 86
>SB_32913| Best HMM Match : TSP_1 (HMM E-Value=1.4e-16)
Length = 491
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = -3
Query: 227 GENCAK--TIPHSFTDGRCDECYGRVHRAGAAERMGQHQSSQAVGVVCGQSYPCSI 66
G C K +I G+C++ Y + + G + +G Q GV G S CS+
Sbjct: 134 GTRCFKDSSIKDVCIQGKCEKSYLNIQQVGCDDVLGSGQRVDRCGVCNGDSSTCSV 189
>SB_41099| Best HMM Match : VWA (HMM E-Value=0)
Length = 3373
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 428 SRRGMARLFQLRRFCLQTFKRNLRETDTIRAAARQ 532
+RRG R F+ R FCLQ + + L IRAA R+
Sbjct: 2204 ARRGDGRYFRGRLFCLQVYSKALTALQ-IRAAERR 2237
>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
Length = 2822
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +3
Query: 186 VSEAMRDRLRAVFSEVVTVDVLDSRDAAHLALLQRPELGITFTKIHCWNLTQYEKCVFLD 365
V E R+R+R ++ T+ ++RD LL R ++ + W+ T E C+ D
Sbjct: 1751 VGEQARERIRRLWEPTYTITYREARDPNDQELLDREKVRESSESPIQWSSTYMEHCLGTD 1810
>SB_47133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Frame = -2
Query: 579 SQRRMSSVALDHHH---QNCLAAARIVSVSRRFRLKV*RQKRRS*NSRAI---PRREQPI 418
+Q +M + D+++ NC AA + ++ + LKV R++RRS S+ I RR+QP+
Sbjct: 150 AQSQMQKIVGDNYNFLWNNCHAAQEALRLA--WGLKVDRKRRRSVRSKGIDLRERRKQPL 207
Query: 417 ALHARRVHRN 388
+ ++ R+
Sbjct: 208 WMRRHQIARS 217
>SB_12440| Best HMM Match : 7tm_1 (HMM E-Value=0.0003)
Length = 252
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -1
Query: 505 SFSKVSFEGLKTKTPELKQSGH-PTSGAADXXXXXXXXSQFWITNISASRNT 353
SFS EG + + PELK H +G AD Q W+TN +R++
Sbjct: 205 SFSSEHIEGYEMRLPELKPFKHYSLNGTAD-----KQIHQAWVTNCIVARDS 251
>SB_49696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 273
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 687 FSNSVRNVSKLVNMSRKPQL*R-CTGREDAC 598
FS VRN S L+N+ R P L C+G C
Sbjct: 178 FSPPVRNPSNLINIKRDPMLVNSCSGNARLC 208
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,413,784
Number of Sequences: 59808
Number of extensions: 425513
Number of successful extensions: 1103
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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