Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0571
         (724 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY121654-1|AAM51981.1|  333|Drosophila melanogaster RE02181p pro...   341   5e-94
AE013599-3158|AAF46696.3|  333|Drosophila melanogaster CG9480-PB...   341   5e-94

>AY121654-1|AAM51981.1|  333|Drosophila melanogaster RE02181p
           protein.
          Length = 333

 Score =  341 bits (839), Expect = 5e-94
 Identities = 153/221 (69%), Positives = 180/221 (81%)
 Frame = +3

Query: 60  MSNRAWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVT 239
           MS  AWVTL TND+Y LGALVLAHSL+RA + +    L+TP VS+AMRDRL+ V++ V  
Sbjct: 1   MSKFAWVTLTTNDTYSLGALVLAHSLKRAKTAHQLAVLVTPNVSQAMRDRLKEVYNVVQE 60

Query: 240 VDVLDSRDAAHLALLQRPELGITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREEL 419
           V+VLDS+DAA+LALL RPELG+TFTK+HCW L Q+EKCVFLDAD LV+QNCDELFEREEL
Sbjct: 61  VNVLDSQDAANLALLSRPELGVTFTKLHCWRLVQFEKCVFLDADTLVLQNCDELFEREEL 120

Query: 420 SAAPDVGWPDCFNSGVFVFKPSNETFEKLIQFAQQRGSFDGGDQGLLNSFFSDWAHGDIN 599
           SAAPDV WPDCFNSGVFVFKPS +TF ++ +FA + GSFDGGDQGLLN FF+DW+  DI 
Sbjct: 121 SAAPDVSWPDCFNSGVFVFKPSVDTFAQITEFAVKNGSFDGGDQGLLNQFFADWSTADIK 180

Query: 600 KHLPFLYNVTTAAFYSYLPALKHYGQNLKIIHFIGAGKPWL 722
           KHLPF+YNVT  A Y YLPA K +   +KI+HF G  KPWL
Sbjct: 181 KHLPFVYNVTAYASYCYLPAFKQFRDKIKILHFAGKLKPWL 221


>AE013599-3158|AAF46696.3|  333|Drosophila melanogaster CG9480-PB,
           isoform B protein.
          Length = 333

 Score =  341 bits (839), Expect = 5e-94
 Identities = 153/221 (69%), Positives = 180/221 (81%)
 Frame = +3

Query: 60  MSNRAWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVT 239
           MS  AWVTL TND+Y LGALVLAHSL+RA + +    L+TP VS+AMRDRL+ V++ V  
Sbjct: 1   MSKFAWVTLTTNDTYSLGALVLAHSLKRAKTAHQLAVLVTPNVSQAMRDRLKEVYNVVQE 60

Query: 240 VDVLDSRDAAHLALLQRPELGITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREEL 419
           V+VLDS+DAA+LALL RPELG+TFTK+HCW L Q+EKCVFLDAD LV+QNCDELFEREEL
Sbjct: 61  VNVLDSQDAANLALLSRPELGVTFTKLHCWRLVQFEKCVFLDADTLVLQNCDELFEREEL 120

Query: 420 SAAPDVGWPDCFNSGVFVFKPSNETFEKLIQFAQQRGSFDGGDQGLLNSFFSDWAHGDIN 599
           SAAPDV WPDCFNSGVFVFKPS +TF ++ +FA + GSFDGGDQGLLN FF+DW+  DI 
Sbjct: 121 SAAPDVSWPDCFNSGVFVFKPSVDTFAQITEFAVKNGSFDGGDQGLLNQFFADWSTADIK 180

Query: 600 KHLPFLYNVTTAAFYSYLPALKHYGQNLKIIHFIGAGKPWL 722
           KHLPF+YNVT  A Y YLPA K +   +KI+HF G  KPWL
Sbjct: 181 KHLPFVYNVTAYASYCYLPAFKQFRDKIKILHFAGKLKPWL 221


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,478,390
Number of Sequences: 53049
Number of extensions: 655793
Number of successful extensions: 1787
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1783
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3231892257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)