Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0568
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1290 - 25927667-25928950                                         31   0.91 
10_08_0886 + 21307977-21308007,21308113-21308240                       29   3.7  
10_06_0028 - 9802362-9802475,9802919-9803090,9803167-9803208,980...    29   3.7  
01_03_0208 + 13797780-13797931,13798234-13798288,13798807-13799943     29   3.7  
01_01_1006 - 7972645-7973811                                           28   6.4  
02_04_0274 - 21455942-21456325,21456453-21456521,21456622-214566...    28   8.5  
02_04_0157 + 20388761-20388763,20389807-20389935,20390206-203903...    28   8.5  

>08_02_1290 - 25927667-25928950
          Length = 427

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -3

Query: 495 APRPLGHVAQQKELVTDRRRSAGPCGSRADRCGDKR*EAYT 373
           APR +G +A   +LV  RR  A P G+R D  G  R +  T
Sbjct: 384 APRQVGAIAGGAQLVGQRRGRAAPTGARDDDDGGVRLQKQT 424


>10_08_0886 + 21307977-21308007,21308113-21308240
          Length = 52

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 226 EPAAGVAAQVEAPDLVVDEDGQHERNGGQPPHELEWV 116
           +PAA  A Q E        DG HER  G  P + +W+
Sbjct: 8   KPAAVAAPQRERGGRGAAADGVHEREAGDRPAKAQWM 44


>10_06_0028 -
           9802362-9802475,9802919-9803090,9803167-9803208,
           9803344-9804011,9804098-9804418,9804495-9804833,
           9804856-9805109,9805300-9805510
          Length = 706

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 413 RDPHGPAERRLSVTSSFCCAT*PRGRGALSHHTIP 517
           R  H P +RR S TS+   A  P G  A+ H T P
Sbjct: 343 RVEHNPTQRRSSCTSTEAPAEQPEGPAAVDHITEP 377


>01_03_0208 + 13797780-13797931,13798234-13798288,13798807-13799943
          Length = 447

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 119 PLKFVWWLPAIPFMLSIFIYDEIRRF 196
           PLK   WL +IP++LS F++  IR F
Sbjct: 314 PLKEAAWLVSIPWILSFFVWLFIRLF 339


>01_01_1006 - 7972645-7973811
          Length = 388

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 5   IIHQGMRNWA-LNFGLIFETALAAFLSYTPGMDKGLRMYPL 124
           ++HQ M  W  L++GL+ + A        PG+   LR  PL
Sbjct: 204 VVHQMMIWWVDLSYGLLADLAFDQLRRVVPGIHHDLRFIPL 244


>02_04_0274 -
           21455942-21456325,21456453-21456521,21456622-21456687,
           21456796-21456861,21456982-21457149,21457262-21457351,
           21457578-21457622,21458112-21458747
          Length = 507

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -3

Query: 228 SSQPPGLXXXXXRLISS*MKMDNMNGMAGSHHTNLSGYILKPLS 97
           SSQP  L       I S +++D     +G HH NLS  I  PL+
Sbjct: 205 SSQPHHLNQHVTPSIDS-LQIDQKEFSSGLHHLNLSSLISGPLA 247


>02_04_0157 +
           20388761-20388763,20389807-20389935,20390206-20390349,
           20390690-20390835,20390915-20391071,20391312-20391370,
           20391466-20391664,20392232-20392381,20392471-20392607,
           20392717-20392863,20392975-20393076,20395655-20395712,
           20395816-20395917,20396236-20396273,20396409-20396535,
           20397092-20397259,20397356-20397487,20400222-20400331,
           20400400-20400460,20400929-20401106,20401194-20401399,
           20401552-20401671,20402523-20402621,20404177-20404386,
           20404704-20404843,20404945-20405053,20405351-20405431,
           20405523-20405693,20405825-20405974,20407029-20407202,
           20407453-20407479,20407688-20407758,20407843-20407942,
           20408305-20408361,20409457-20409513,20409656-20409736,
           20410336-20410421,20410535-20410649
          Length = 1466

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 380 RTRQRLHIHRERHRNLCHSDTTTQN 306
           +T  R+H  R+ +R+LC + TT Q+
Sbjct: 803 QTYYRMHFARKNYRDLCSASTTVQS 827


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,607,262
Number of Sequences: 37544
Number of extensions: 392929
Number of successful extensions: 1227
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)