Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0568
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53499| Best HMM Match : Cation_ATPase_C (HMM E-Value=2e-23)        110   1e-24
SB_42324| Best HMM Match : No HMM Matches (HMM E-Value=.)             102   3e-22
SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)                  68   9e-12
SB_40279| Best HMM Match : zf-MYM (HMM E-Value=0.66)                   29   4.9  
SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)                     28   6.5  

>SB_53499| Best HMM Match : Cation_ATPase_C (HMM E-Value=2e-23)
          Length = 109

 Score =  110 bits (264), Expect = 1e-24
 Identities = 50/72 (69%), Positives = 55/72 (76%)
 Frame = +2

Query: 2   SIIHQGMRNWALNFGLIFETALAAFLSYTPGMDKGLRMYPLKFVWWLPAIPFMLSIFIYD 181
           S+  QGM N  LNFGL FETALAAF SYTPGM  GLRMYPL + WW PA+PF L I+IYD
Sbjct: 37  SLFTQGMTNKFLNFGLFFETALAAFFSYTPGMSNGLRMYPLNWQWWFPAMPFSLIIWIYD 96

Query: 182 EIRRFYLRRNPG 217
           E RR+ LRR PG
Sbjct: 97  ECRRWILRRYPG 108


>SB_42324| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score =  102 bits (245), Expect = 3e-22
 Identities = 43/73 (58%), Positives = 53/73 (72%)
 Frame = +2

Query: 26  NWALNFGLIFETALAAFLSYTPGMDKGLRMYPLKFVWWLPAIPFMLSIFIYDEIRRFYLR 205
           N  L  GLIFETALAAFL YTPG+   L +Y L   WW   +P+ + IF+YDE+RR+ LR
Sbjct: 451 NHILIIGLIFETALAAFLLYTPGLSTALSLYGLNASWWFIGVPYSILIFVYDEVRRYILR 510

Query: 206 RNPGGWLEQETYY 244
           + PGGW+EQETYY
Sbjct: 511 KYPGGWVEQETYY 523


>SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
          Length = 1003

 Score = 67.7 bits (158), Expect = 9e-12
 Identities = 31/44 (70%), Positives = 33/44 (75%)
 Frame = +2

Query: 2   SIIHQGMRNWALNFGLIFETALAAFLSYTPGMDKGLRMYPLKFV 133
           S+  QGM N  LNFGL FETALAAF SYTPGM  GLRMYPL  +
Sbjct: 861 SLFTQGMTNKFLNFGLFFETALAAFFSYTPGMSNGLRMYPLNHI 904


>SB_40279| Best HMM Match : zf-MYM (HMM E-Value=0.66)
          Length = 364

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 271 TVDSDRRCLIISLLFEPAAGVAAQVE-APDLVVDEDGQHERNGGQPPHELEWVHPQ 107
           T D+D   +   LL EP   V  Q++ A + ++ E+G     GG+  +E E  H Q
Sbjct: 263 TDDADDSTVSGILLPEPGVNVRDQIQSAVERLISEEGNDNHAGGEVNNEGEEAHRQ 318


>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
          Length = 2440

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 269 RRASVSHRVHNVHFVLLYRSDRGCGAVPGVCVIAVVYASHRLSPH 403
           R  S  H VHNV       S   C +V  + +  ++YAS  + P+
Sbjct: 76  RELSTDHMVHNVELFRSRCSQHICTSVLALTLEDILYASQAMKPN 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,404,299
Number of Sequences: 59808
Number of extensions: 452482
Number of successful extensions: 1253
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)