Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0568
         (713 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    26   1.4  
AJ439060-9|CAD27760.1|  348|Anopheles gambiae putative translati...    26   1.4  
AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    25   1.8  
AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    25   1.8  
AY423354-1|AAQ94040.1|  112|Anopheles gambiae defender against p...    24   4.1  
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    24   5.4  

>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 259 DRRCLIISLLFEPAAGVAAQVEAPDLVV 176
           DR CLII   F   A +A    AP ++V
Sbjct: 505 DRLCLIIFTFFTIVATIAVLFSAPHIIV 532


>AJ439060-9|CAD27760.1|  348|Anopheles gambiae putative translation
           initiation factor protein.
          Length = 348

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = -2

Query: 214 GVAAQVEAPDLVVD---EDGQHERNGGQPPHELEWVHPQALVHTG 89
           GV   V AP   +D   EDG H +   +P HEL  +  Q +   G
Sbjct: 266 GVPFYVAAPFTSIDVAIEDGSHIKIEERPEHELTHIGGQRIAAPG 310


>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 259 DRRCLIISLLFEPAAGVAAQVEAPDLVV 176
           DR CLII  LF   A +A    AP  +V
Sbjct: 481 DRLCLIIFTLFTIIATLAVLFSAPHFIV 508


>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = -2

Query: 166 GQHERNGGQPPHELEW---VH-PQALVHTGSVREERRQRGFKYET 44
           G   + GG PPH   W   VH  Q+ V+     + +R    +Y+T
Sbjct: 248 GSSSKKGGPPPHIYPWMKRVHIGQSTVNANGETKRQRTSYTRYQT 292


>AY423354-1|AAQ94040.1|  112|Anopheles gambiae defender against
           programmed cell death protein.
          Length = 112

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +1

Query: 457 FLLLRNVTERTRRALASHYPLYRTMYVYICTVECGVCYVCVMI*KN 594
           ++LL  + +     L   +P    +  +I TV C V  VC+ +  N
Sbjct: 32  YILLTGIMQFVYCCLVGTFPFNSFLAGFISTVSCFVLGVCLRLQSN 77


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated
          calcium channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 5  IIHQGMRNWALNFGL 49
          I H  +RNWA+ FG+
Sbjct: 45 IPHNEVRNWAIRFGV 59


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 721,487
Number of Sequences: 2352
Number of extensions: 15431
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 73177125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)