Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0568
(713 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81028-2|CAB02694.1| 996|Caenorhabditis elegans Hypothetical pr... 133 1e-31
U18546-1|AAB02615.1| 996|Caenorhabditis elegans Na,K-ATPase alp... 133 1e-31
Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical pr... 68 6e-12
Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical p... 68 6e-12
AF016433-4|AAB65385.2| 1054|Caenorhabditis elegans Hypothetical ... 36 0.022
AF016446-10|AAC24161.1| 1050|Caenorhabditis elegans Hypothetical... 36 0.038
Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical pr... 30 1.4
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 29 2.5
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 29 2.5
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 29 2.5
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 29 2.5
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 29 2.5
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 29 2.5
>Z81028-2|CAB02694.1| 996|Caenorhabditis elegans Hypothetical protein
B0365.3 protein.
Length = 996
Score = 133 bits (322), Expect = 1e-31
Identities = 54/81 (66%), Positives = 66/81 (81%)
Frame = +2
Query: 2 SIIHQGMRNWALNFGLIFETALAAFLSYTPGMDKGLRMYPLKFVWWLPAIPFMLSIFIYD 181
S++ QGM NW LNFGL+FETALA F+ Y PG+D GLRMY L+F WW A+PF + IF+YD
Sbjct: 916 SLVQQGMSNWTLNFGLVFETALAWFMCYCPGLDNGLRMYGLRFSWWFCALPFSILIFVYD 975
Query: 182 EIRRFYLRRNPGGWLEQETYY 244
EIRRF +RR PGGW+E+ETYY
Sbjct: 976 EIRRFLIRRYPGGWVERETYY 996
>U18546-1|AAB02615.1| 996|Caenorhabditis elegans Na,K-ATPase alpha
subunit protein.
Length = 996
Score = 133 bits (322), Expect = 1e-31
Identities = 54/81 (66%), Positives = 66/81 (81%)
Frame = +2
Query: 2 SIIHQGMRNWALNFGLIFETALAAFLSYTPGMDKGLRMYPLKFVWWLPAIPFMLSIFIYD 181
S++ QGM NW LNFGL+FETALA F+ Y PG+D GLRMY L+F WW A+PF + IF+YD
Sbjct: 916 SLVQQGMSNWTLNFGLVFETALAWFMCYCPGLDNGLRMYGLRFSWWFCALPFSILIFVYD 975
Query: 182 EIRRFYLRRNPGGWLEQETYY 244
EIRRF +RR PGGW+E+ETYY
Sbjct: 976 EIRRFLIRRYPGGWVERETYY 996
>Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical protein
C01G12.8 protein.
Length = 1049
Score = 68.1 bits (159), Expect = 6e-12
Identities = 32/81 (39%), Positives = 50/81 (61%)
Frame = +2
Query: 2 SIIHQGMRNWALNFGLIFETALAAFLSYTPGMDKGLRMYPLKFVWWLPAIPFMLSIFIYD 181
S++ QGM N LN +IF LA F+ TP +++ L + + A+PF I +YD
Sbjct: 969 SLVMQGMENHVLNTSVIFTCFLAIFVLNTPFVNEVLGVQGFRLEIGFLALPFAFFIGLYD 1028
Query: 182 EIRRFYLRRNPGGWLEQETYY 244
E+RR+++R PGG++ +ETYY
Sbjct: 1029 EVRRYFIRTYPGGYIYKETYY 1049
>Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical
protein C01G12.8 protein.
Length = 1049
Score = 68.1 bits (159), Expect = 6e-12
Identities = 32/81 (39%), Positives = 50/81 (61%)
Frame = +2
Query: 2 SIIHQGMRNWALNFGLIFETALAAFLSYTPGMDKGLRMYPLKFVWWLPAIPFMLSIFIYD 181
S++ QGM N LN +IF LA F+ TP +++ L + + A+PF I +YD
Sbjct: 969 SLVMQGMENHVLNTSVIFTCFLAIFVLNTPFVNEVLGVQGFRLEIGFLALPFAFFIGLYD 1028
Query: 182 EIRRFYLRRNPGGWLEQETYY 244
E+RR+++R PGG++ +ETYY
Sbjct: 1029 EVRRYFIRTYPGGYIYKETYY 1049
>AF016433-4|AAB65385.2| 1054|Caenorhabditis elegans Hypothetical
protein C09H5.2a protein.
Length = 1054
Score = 36.3 bits (80), Expect = 0.022
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +2
Query: 2 SIIHQGMRNWALNFGLIFETALAAFLSYTPGMDKGLRMYPLKFVWWLPAIPFMLSIFIYD 181
SI GM N +I + L ++ PG+ P + WL + + I+I++
Sbjct: 974 SIFVHGMANIVAILAVIIDLLLICLFTFVPGVQYVFGSQPPPWECWLVPVIVGIWIWIFN 1033
Query: 182 EIRRFYLRRNP 214
E+R+F +R P
Sbjct: 1034 ELRKFGIRNYP 1044
>AF016446-10|AAC24161.1| 1050|Caenorhabditis elegans Hypothetical
protein C02E7.1 protein.
Length = 1050
Score = 35.5 bits (78), Expect = 0.038
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +2
Query: 2 SIIHQGMRNWALNFGLIFETALAAFLSYTPGMDKGLRMYPLKFVWWLPAIPFMLSIFIYD 181
SI G+ N F +I + L ++ PG+ P + WL I + I+I++
Sbjct: 970 SIFAHGLGNIVAIFAVIIDLLLICIFTFVPGVKYIFGSQPPPWQCWLVPIVVGVWIWIFN 1029
Query: 182 EIRRFYLRRNP 214
E+R+ +R+ P
Sbjct: 1030 ELRKLGIRKYP 1040
>Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical
protein F45H11.4 protein.
Length = 1243
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 219 AGSNKRLIIKQRRSLSTVVHQLVTAYIMFILCCCIGV 329
AGS KR++ K+ R L+T ++T ++ + C +GV
Sbjct: 672 AGSKKRILTKKPRFLTTFSQVVITWILVAVQCVIVGV 708
>Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical
protein F45H11.4 protein.
Length = 1243
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 219 AGSNKRLIIKQRRSLSTVVHQLVTAYIMFILCCCIGV 329
AGS KR++ K+ R L+T ++T ++ + C +GV
Sbjct: 672 AGSKKRILTKKPRFLTTFSQVVITWILVAVQCVIVGV 708
>Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical
protein C33G3.3 protein.
Length = 409
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 47 LIFETALAAFLSYTPGMDKGLRMYPLKFVWWLPAIPFMLSIFIYDEIRR 193
LIF T +A FLS T K +R + V+ L +I + IF +++R
Sbjct: 285 LIFSTRIAPFLSSTASTPKPMRFLEIALVFNLISITTSIIIFCCMQVKR 333
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 29.5 bits (63), Expect = 2.5
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = +3
Query: 288 TAYIMFILCCCIGVTEVA--VPFPVYV*SLSCTLLTACHRIGPRATRTVQPSAVCLSLVP 461
+A + I+ CC+ V ++ V + Y+ L A H G VQ + CL+LV
Sbjct: 70 SAISLRIIFCCLLVVDLTATVIYDFYLLFTKSPLYNAIHFYGD----LVQYAGFCLALVL 125
Query: 462 SVAQRDREDAARSRITLSLISNYVCIYMHCGV 557
++A R+ R IT +I+ Y + + CGV
Sbjct: 126 TIACRN-----RGIITSGVITLYWLLVVVCGV 152
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 29.5 bits (63), Expect = 2.5
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = +3
Query: 288 TAYIMFILCCCIGVTEVA--VPFPVYV*SLSCTLLTACHRIGPRATRTVQPSAVCLSLVP 461
+A + I+ CC+ V ++ V + Y+ L A H G VQ + CL+LV
Sbjct: 70 SAISLRIIFCCLLVVDLTATVIYDFYLLFTKSPLYNAIHFYGD----LVQYAGFCLALVL 125
Query: 462 SVAQRDREDAARSRITLSLISNYVCIYMHCGV 557
++A R+ R IT +I+ Y + + CGV
Sbjct: 126 TIACRN-----RGIITSGVITLYWLLVVVCGV 152
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 29.5 bits (63), Expect = 2.5
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = +3
Query: 288 TAYIMFILCCCIGVTEVA--VPFPVYV*SLSCTLLTACHRIGPRATRTVQPSAVCLSLVP 461
+A + I+ CC+ V ++ V + Y+ L A H G VQ + CL+LV
Sbjct: 70 SAISLRIIFCCLLVVDLTATVIYDFYLLFTKSPLYNAIHFYGD----LVQYAGFCLALVL 125
Query: 462 SVAQRDREDAARSRITLSLISNYVCIYMHCGV 557
++A R+ R IT +I+ Y + + CGV
Sbjct: 126 TIACRN-----RGIITSGVITLYWLLVVVCGV 152
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 29.5 bits (63), Expect = 2.5
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = +3
Query: 288 TAYIMFILCCCIGVTEVA--VPFPVYV*SLSCTLLTACHRIGPRATRTVQPSAVCLSLVP 461
+A + I+ CC+ V ++ V + Y+ L A H G VQ + CL+LV
Sbjct: 70 SAISLRIIFCCLLVVDLTATVIYDFYLLFTKSPLYNAIHFYGD----LVQYAGFCLALVL 125
Query: 462 SVAQRDREDAARSRITLSLISNYVCIYMHCGV 557
++A R+ R IT +I+ Y + + CGV
Sbjct: 126 TIACRN-----RGIITSGVITLYWLLVVVCGV 152
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 29.5 bits (63), Expect = 2.5
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = +3
Query: 288 TAYIMFILCCCIGVTEVA--VPFPVYV*SLSCTLLTACHRIGPRATRTVQPSAVCLSLVP 461
+A + I+ CC+ V ++ V + Y+ L A H G VQ + CL+LV
Sbjct: 70 SAISLRIIFCCLLVVDLTATVIYDFYLLFTKSPLYNAIHFYGD----LVQYAGFCLALVL 125
Query: 462 SVAQRDREDAARSRITLSLISNYVCIYMHCGV 557
++A R+ R IT +I+ Y + + CGV
Sbjct: 126 TIACRN-----RGIITSGVITLYWLLVVVCGV 152
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 29.5 bits (63), Expect = 2.5
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = +3
Query: 288 TAYIMFILCCCIGVTEVA--VPFPVYV*SLSCTLLTACHRIGPRATRTVQPSAVCLSLVP 461
+A + I+ CC+ V ++ V + Y+ L A H G VQ + CL+LV
Sbjct: 70 SAISLRIIFCCLLVVDLTATVIYDFYLLFTKSPLYNAIHFYGD----LVQYAGFCLALVL 125
Query: 462 SVAQRDREDAARSRITLSLISNYVCIYMHCGV 557
++A R+ R IT +I+ Y + + CGV
Sbjct: 126 TIACRN-----RGIITSGVITLYWLLVVVCGV 152
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,425,292
Number of Sequences: 27780
Number of extensions: 315196
Number of successful extensions: 960
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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