Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0568
(713 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 28 0.076
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 23 2.9
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 23 2.9
DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex det... 23 3.8
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 22 5.0
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 22 5.0
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 22 5.0
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 22 5.0
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 22 5.0
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 22 5.0
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 22 5.0
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 22 6.6
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 28.3 bits (60), Expect = 0.076
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 259 DRRCLIISLLFEPAAGVAAQVEAPDLVV 176
DR CLII LF A +A + AP ++V
Sbjct: 527 DRMCLIIFTLFTIIATIAVLLSAPHIIV 554
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 23.0 bits (47), Expect = 2.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 688 SRFELLNHLNIKITRFTTLNNNNNSMRIIYIYFFISSHRRNKL 560
S+F+L+ + + TTL++ SM + +YF + H N L
Sbjct: 177 SQFDLVANPTANYSASTTLSHAEYSM--LLVYFHLQRHMGNFL 217
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 23.0 bits (47), Expect = 2.9
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 137 WLPAIPFMLSIFIYDEIRRFYLRRNPGGW 223
WLP + L IY IRR L GGW
Sbjct: 546 WLPLLRNRLDTLIYPIIRR-KLGSALGGW 573
>DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 22.6 bits (46), Expect = 3.8
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = -2
Query: 661 NIKITRFTTLNNNNNSMRIIYIYFFISSHRRNKLHTPQCIY 539
N + + NNNNN +Y+ I+ + + P IY
Sbjct: 88 NYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPIPVPVPIY 128
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.2 bits (45), Expect = 5.0
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = -2
Query: 661 NIKITRFTTLNNNNNSMRIIYIYFFISSHRRNKLHTPQCIY 539
N + + NNNNN +Y+ I+ + + P IY
Sbjct: 88 NYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPVPVPVPIY 128
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.2 bits (45), Expect = 5.0
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = -2
Query: 661 NIKITRFTTLNNNNNSMRIIYIYFFISSHRRNKLHTPQCIY 539
N + + NNNNN +Y+ I+ + + P IY
Sbjct: 88 NYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPVPVPVPIY 128
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.2 bits (45), Expect = 5.0
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = -2
Query: 661 NIKITRFTTLNNNNNSMRIIYIYFFISSHRRNKLHTPQCIY 539
N + + NNNNN +Y+ I+ + + P IY
Sbjct: 88 NYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPVPVPVPIY 128
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.2 bits (45), Expect = 5.0
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = -2
Query: 661 NIKITRFTTLNNNNNSMRIIYIYFFISSHRRNKLHTPQCIY 539
N + + NNNNN +Y+ I+ + + P IY
Sbjct: 88 NYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPVPVPVPIY 128
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.2 bits (45), Expect = 5.0
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = -2
Query: 661 NIKITRFTTLNNNNNSMRIIYIYFFISSHRRNKLHTPQCIY 539
N + + NNNNN +Y+ I+ + + P IY
Sbjct: 88 NYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPVPVPVPIY 128
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.2 bits (45), Expect = 5.0
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = -2
Query: 661 NIKITRFTTLNNNNNSMRIIYIYFFISSHRRNKLHTPQCIY 539
N + + NNNNN +Y+ I+ + + P IY
Sbjct: 88 NYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPVPVPVPIY 128
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.2 bits (45), Expect = 5.0
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = -2
Query: 661 NIKITRFTTLNNNNNSMRIIYIYFFISSHRRNKLHTPQCIY 539
N + + NNNNN +Y+ I+ + + P IY
Sbjct: 88 NYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPVPVPVPIY 128
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 21.8 bits (44), Expect = 6.6
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +1
Query: 7 HSPGHAQLG 33
H PGHAQ+G
Sbjct: 213 HLPGHAQMG 221
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,133
Number of Sequences: 438
Number of extensions: 4445
Number of successful extensions: 17
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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