Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0567
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    29   0.83 
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb...    28   1.1  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    28   1.4  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    27   1.9  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    27   2.5  
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    27   3.3  
SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra...    27   3.3  
SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom...    27   3.3  
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz...    26   5.8  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    26   5.8  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    26   5.8  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   7.7  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   7.7  
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    25   7.7  
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    25   7.7  
SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyce...    25   7.7  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    25   7.7  
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch...    25   7.7  

>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 366 FAESRLPENVKDELEMIAAVSVDGMDRLIRAHGQTLKDIANVRNNNFRRIPDAV 527
           F+     E+V +EL  +   ++DG +  I A+GQT     +  ++N   IP +V
Sbjct: 531 FSPETTNEDVFNELSQLIQSAMDGYNVCIFAYGQTGSGKTHTMSSNTGMIPSSV 584


>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 178

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +3

Query: 201 GYKDTMFKFSSESAAFTGNRYSIAGKCLPHLPQWA--IDNFGIDPDSPPKIPEAPSSFAE 374
           G++ +    S+ SA  T  R SI+      +  W    +  G D  +P +  EAP S A+
Sbjct: 93  GHQRSASHGSTSSATSTPKRLSISSMDPARIHLWRQFCNVVGYDMPTPGEQKEAPPSPAQ 152

Query: 375 SRLPENVKDE 404
             +PE+  +E
Sbjct: 153 EAIPESPVEE 162


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -1

Query: 554 YLLMTIWPYDSVRYSPKVVISDVRYVL*GLPVCSDQSIH--AVHAYCGDHLQFILNVFRQ 381
           YL+  + P+  V  S +    ++      +  C+   +    VHA  GDHL+ IL+ +RQ
Sbjct: 589 YLMSIVIPFTGVTASSRRETVNILSSSISVIECAVNDVFYATVHAL-GDHLEIILSPYRQ 647

Query: 380 ATFCKT 363
            ++  T
Sbjct: 648 ISYAMT 653


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
 Frame = +3

Query: 204 YKDTM---FKFSSES-AAFTGNRYSIAGKCLP------HLPQWAIDNFGIDPDSPPKIPE 353
           Y+D M   F+ +S+    FT  R ++AG           L QW + N+ ++PD+ P    
Sbjct: 93  YRDFMISTFRLNSKVYLTFTACRRNLAGDVCAVLRVHRFLEQWGLINYNVNPDTRPSKIG 152

Query: 354 APSSFAESRLPENVKDELEMIAAVSVDGMDRLIRAHGQTLKDIANVRNNNFRRIPDAVI 530
            PS+     L +  +  + ++   S      + R+   T++D + VR N +    D V+
Sbjct: 153 PPSTSHFQILADTPRGLVPLLPPPS----SSIPRSKAVTIEDPSIVRTNIYDPSLDDVL 207


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 451 ISLSMPSTLTAAIISNSSLTFSGRRLSAKLLGASGI 344
           ISL  PS + A ++S  ++     R+++ L+G SG+
Sbjct: 164 ISLVYPSLIAAGVVSLVTILVPPMRMASDLVGQSGL 199


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 171 RQDLLKWYGWGYKDTMFKFSSESAAFTGNRYSIAGKC 281
           +QD + W   G++   ++   E+  F  N Y++ G C
Sbjct: 2   QQDEVIWQVVGHEFCSYRIKGEAQNFCRNEYNVTGLC 38


>SPBC1289.09 |tim21||mitochondrial inner membrane presequence
           translocase complex subunit Tim21 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 223

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 516 PDAVIWPDCHEQVEKIVQCASRHNFVIIPFGGGTFGV 626
           P    W D     +     A+  NF I+ FGGG FG+
Sbjct: 49  PSNKAWKDLTAPQKAYRTSANIGNFSIVIFGGGVFGL 85


>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +3

Query: 99  PSDKNKNESANTMMIKVKSAIPRRRQDLLKWYGWGYKDTMFKFSSESAAF 248
           P DK   ES +    ++   + +    + +   W ++DT+ K SS S AF
Sbjct: 282 PDDKLLAESDHHSASQIDELVRQSLNVMSEAKSWTFEDTITKISSNSKAF 331


>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
           Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 60  EVKEQWRVLKIKYPSDKNKNE 122
           E+   WR   +KY  DKN N+
Sbjct: 24  EIHRAWRKTSLKYHPDKNPND 44


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 471 LKDIANVRNNNFRRIPDAVIWPDCHEQVEKIVQCASRHNFVII 599
           L+D+A +  N   RI DAV W     Q+E     +SR  F ++
Sbjct: 10  LRDLARIFTN-LSRIDDAVNWEINKNQIEITCLNSSRSGFSMV 51


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +3

Query: 60  EVKEQWRVLKIKYPSDKNKNESANTMMIKVKSAI---PRRRQDLLKWYG 197
           E+K+ +R L +KY  DKN N       I +   +   P+RR+ L   YG
Sbjct: 21  ELKKAYRKLALKYHPDKNPNGEKKFKEISLAYEVLSDPQRRK-LYDQYG 68


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = -1

Query: 449 QSIHAVHAYCGDHLQFILNVFR 384
           + + AVH++CG+  +F+ ++ R
Sbjct: 446 EGVSAVHSFCGNFRRFMFDIVR 467


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 560 LFYLLMTIWPYDSVRYSPKVVISDVRYVL*GLPVCS 453
           L+YLL  ++ + S      VVI+D  Y+   LPV S
Sbjct: 247 LYYLLYVLFVFFSGSSGVSVVITDENYLPVSLPVYS 282


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 20/74 (27%), Positives = 28/74 (37%)
 Frame = -2

Query: 532 HMTASGILRKLLFLTFAMSFKVCPCALISLSMPSTLTAAIISNSSLTFSGRRLSAKLLGA 353
           H  A  I+   L L       +C  A +SL++PS   A   +      +  RL      A
Sbjct: 259 HAAAENIVPLTLELGGKSPLIICEDADLSLAIPSAAFAIFFNQGEACTAASRLIVHESVA 318

Query: 352 SGILGGESGSMPKL 311
             +LGG      KL
Sbjct: 319 DEVLGGLVSEANKL 332


>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +3

Query: 498 NNFRRIPDAVIWPDCHEQVEKIVQCASRHNFVIIPFGGGT 617
           N +R      + P   +QV +I++  ++    ++P GG T
Sbjct: 91  NKYRGKTQLALKPKTTQQVSEILKYCNQKKLAVVPQGGNT 130


>SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 138

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 8  MSSPNEISPENLRNIDNGSERTVESVK 88
          M SPNEIS  ++R+ D   ER   SV+
Sbjct: 17 MESPNEISIIDVRDYDYEGERIPGSVR 43


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 342 KIPEAPSSFAESRLPENVKDELE 410
           KIP++PSS + S++P   K +L+
Sbjct: 345 KIPQSPSSLSPSKIPIRKKRKLK 367


>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
 Frame = +3

Query: 282 LPHLPQWAIDNFGIDPDSPPKIPEAPSSFAESRLPENVKDELEMIAAVSVDGMDRLIRAH 461
           LP L   +   FG     P    EAP   +    P++++    MI   ++  +D L R  
Sbjct: 195 LPMLDNISNHRFGAPFSHPVNRKEAPDYDSLVYKPQDLRTLKNMIKEGNITEVDELYR-- 252

Query: 462 GQTLKDIANVRNNNFRRIPDAV-IWPD-CHEQVEKI 563
            + L+  AN +  N     +A+ IW D C    E++
Sbjct: 253 -EVLRIFANCKMYNGSDPANAMSIWGDECFRYTEEL 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,026
Number of Sequences: 5004
Number of extensions: 60472
Number of successful extensions: 206
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)