Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0567
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0450 - 3395644-3395837,3396164-3396190,3396266-3396396,339...    42   3e-04
06_01_1199 - 10313329-10314858                                         29   3.4  
05_01_0411 + 3243025-3243092,3243348-3243496,3243740-3243872,324...    29   3.4  
12_02_0751 + 22776979-22777169,22777217-22777496                       28   6.0  
01_06_1357 + 36632992-36633621,36634003-36635136,36635525-366361...    28   6.0  
04_04_1072 - 30587344-30588034,30589866-30590035,30590682-30590879     28   7.9  
04_03_0849 + 20265511-20265984,20266452-20266617,20266694-202669...    28   7.9  
02_04_0071 + 19457502-19458092,19458558-19458723,19458816-194590...    28   7.9  

>07_01_0450 -
           3395644-3395837,3396164-3396190,3396266-3396396,
           3396612-3396691,3397283-3397345,3397588-3397697,
           3398316-3398424,3398783-3398857,3399363-3399459,
           3399622-3399683,3399966-3400026,3400330-3400469,
           3400747-3400839,3401345-3401393,3401534-3401634,
           3401723-3401816,3401904-3402139
          Length = 573

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 16/45 (35%), Positives = 29/45 (64%)
 Frame = +3

Query: 513 IPDAVIWPDCHEQVEKIVQCASRHNFVIIPFGGGTFGVRARSLAP 647
           +PD V++P   ++V+KIV   +++   I+P+GG T  +   +LAP
Sbjct: 136 VPDVVVFPRSQDEVQKIVMACNKYKVPIVPYGGAT-SIEGHTLAP 179


>06_01_1199 - 10313329-10314858
          Length = 509

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +3

Query: 438 MDRLIRAHGQTLKDIANVRNNNFRRIPDAVIWPDCHEQVEKIVQCASRHN 587
           +D+  R     ++ + ++R+ N   +   V  PDCH  V + ++  S HN
Sbjct: 243 LDKWTRQIQSEIRTVGHIRHRNLLPLAAHVPRPDCHYLVYEFMKNGSLHN 292


>05_01_0411 +
           3243025-3243092,3243348-3243496,3243740-3243872,
           3244740-3244860,3245065-3245181,3245303-3245389,
           3245941-3246000,3246097-3246174,3246587-3246658,
           3246767-3246925
          Length = 347

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 60  EVKEQWRVLKIKYPSDKN-KNESANTMMIKVKSA 158
           ++K  +R L +KY  DKN  NE AN    ++ +A
Sbjct: 40  QIKRSYRKLALKYHPDKNPNNEEANKRFAEINNA 73


>12_02_0751 + 22776979-22777169,22777217-22777496
          Length = 156

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 412 ISNSSLTFSGRRLSAKLLGASGILGGESGSMPKLSMAHCGRWGK 281
           +SN ++   G R  A   G SG+ GGE G         C RWG+
Sbjct: 92  LSNINIV-DGERGGAARGGRSGVAGGECGRGSTRWEEQCCRWGE 134


>01_06_1357 +
           36632992-36633621,36634003-36635136,36635525-36636193,
           36636250-36636343,36636378-36636490
          Length = 879

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 566 PMCVAAQLRDHSFRWGHVRC-PGAVTCPEN-EPRP 664
           P  +AA++    FR  H+RC P     PE+ EP P
Sbjct: 305 PTILAARIHPSIFRGRHIRCSPNGAAVPESPEPAP 339


>04_04_1072 - 30587344-30588034,30589866-30590035,30590682-30590879
          Length = 352

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/48 (31%), Positives = 29/48 (60%)
 Frame = +3

Query: 387 ENVKDELEMIAAVSVDGMDRLIRAHGQTLKDIANVRNNNFRRIPDAVI 530
           +N + +L+M + +S+D +  L  + GQ    I ++ NNN   IP+++I
Sbjct: 29  KNEEHKLDM-SGMSMDALPHLTMSLGQVT--ILDLSNNNLESIPESII 73


>04_03_0849 +
           20265511-20265984,20266452-20266617,20266694-20266905,
           20267154-20267647,20267732-20267780,20267922-20268251
          Length = 574

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 194 RMGLQGHHVQIQQ*ECRLHREQILNSREMLTP 289
           RMG+ GH ++IQ     L    +L +REMLTP
Sbjct: 273 RMGIHGHPLEIQ----ALFYSALLCAREMLTP 300


>02_04_0071 +
           19457502-19458092,19458558-19458723,19458816-19459027,
           19460103-19460596,19460682-19460730,19460886-19461194
          Length = 606

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 194 RMGLQGHHVQIQQ*ECRLHREQILNSREMLTP 289
           RMG+ GH ++IQ     L    +L +REMLTP
Sbjct: 312 RMGIHGHPLEIQ----ALFYSALLCAREMLTP 339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,414,833
Number of Sequences: 37544
Number of extensions: 441179
Number of successful extensions: 1477
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1477
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)