Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0567
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ002686-1|CAA05690.1|  597|Caenorhabditis elegans alkyl-dihydro...   110   1e-24
AC024801-10|AAK68514.1|  597|Caenorhabditis elegans Alkyl-dihydr...   110   1e-24
AC006804-5|AAF60754.1|  213|Caenorhabditis elegans Hypothetical ...    30   1.3  
Z78420-5|CAI79244.1|  295|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z78420-4|CAB01709.1|  298|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z81139-3|CAB03482.1|  520|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z74031-11|CAD54138.1|  474|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z66513-15|CAA91337.3|  487|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z66513-5|CAA91334.1|  331|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U00052-4|AAK21419.2|  438|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AL110499-6|CAB57915.2|  487|Caenorhabditis elegans Hypothetical ...    27   9.4  
AL032626-26|CAA21533.2|  143|Caenorhabditis elegans Hypothetical...    27   9.4  
AL022289-2|CAA18374.1|  478|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AJ002686-1|CAA05690.1|  597|Caenorhabditis elegans
           alkyl-dihydroxyacetonephosphatesynthase protein.
          Length = 597

 Score =  110 bits (264), Expect = 1e-24
 Identities = 55/161 (34%), Positives = 88/161 (54%), Gaps = 4/161 (2%)
 Frame = +3

Query: 147 VKSAIPRRRQD-LLKWYGWGYKDTMFKFSSES-AAFTGNRYSIAGKCLPHLPQWAIDNFG 320
           ++  +P+  +D +LKW GWGY D+ F  + +    FTG++Y I+GK +PH   W  +  G
Sbjct: 8   IEHDVPQSYRDKILKWNGWGYSDSQFAINKDGHVTFTGDKYEISGKVMPHFRPWFENYLG 67

Query: 321 IDPDSPPKIPEAPSSFAESRLP-ENVKDEL-EMIAAVSVDGMDRLIRAHGQTLKDIANVR 494
           ID        +      ++ +  E++ + L E   + S +   RL+R HG T+ D+ N+R
Sbjct: 68  IDLGFVSPAQKLSDVIIDAPVENEDIIEFLQENKISFSNEARIRLMRGHGHTVHDMINLR 127

Query: 495 NNNFRRIPDAVIWPDCHEQVEKIVQCASRHNFVIIPFGGGT 617
                R+PD V+WP    ++ KI++ A  HN  IIP GGGT
Sbjct: 128 EGKIPRLPDIVVWPKSEHEIVKIIEGAMSHNCAIIPIGGGT 168


>AC024801-10|AAK68514.1|  597|Caenorhabditis elegans
           Alkyl-dihydroxyacetonephosphatesynthase protein 1
           protein.
          Length = 597

 Score =  110 bits (264), Expect = 1e-24
 Identities = 55/161 (34%), Positives = 88/161 (54%), Gaps = 4/161 (2%)
 Frame = +3

Query: 147 VKSAIPRRRQD-LLKWYGWGYKDTMFKFSSES-AAFTGNRYSIAGKCLPHLPQWAIDNFG 320
           ++  +P+  +D +LKW GWGY D+ F  + +    FTG++Y I+GK +PH   W  +  G
Sbjct: 8   IEHDVPQSYRDKILKWNGWGYSDSQFAINKDGHVTFTGDKYEISGKVMPHFRPWFENYLG 67

Query: 321 IDPDSPPKIPEAPSSFAESRLP-ENVKDEL-EMIAAVSVDGMDRLIRAHGQTLKDIANVR 494
           ID        +      ++ +  E++ + L E   + S +   RL+R HG T+ D+ N+R
Sbjct: 68  IDLGFVSPAQKLSDVIIDAPVENEDIIEFLQENKISFSNEARIRLMRGHGHTVHDMINLR 127

Query: 495 NNNFRRIPDAVIWPDCHEQVEKIVQCASRHNFVIIPFGGGT 617
                R+PD V+WP    ++ KI++ A  HN  IIP GGGT
Sbjct: 128 EGKIPRLPDIVVWPKSEHEIVKIIEGAMSHNCAIIPIGGGT 168


>AC006804-5|AAF60754.1|  213|Caenorhabditis elegans Hypothetical
           protein Y53G8B.1 protein.
          Length = 213

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +3

Query: 252 GNRYSIAGKCLPHLPQWAIDNFGIDPDSPPKIPEAPSSFAESRLPE 389
           GN+ SIA  CLP +   AI+ + +D    P I    +  AE  LPE
Sbjct: 155 GNQISIADICLPSIVYNAIEKYHVDMTPYPIITRISNKLAE--LPE 198


>Z78420-5|CAI79244.1|  295|Caenorhabditis elegans Hypothetical
           protein F45H11.1b protein.
          Length = 295

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 24/64 (37%), Positives = 30/64 (46%)
 Frame = -2

Query: 490 TFAMSFKVCPCALISLSMPSTLTAAIISNSSLTFSGRRLSAKLLGASGILGGESGSMPKL 311
           T A SF+       S S+PS LTA+  S +SL  SG   S    G SG   G +G  P  
Sbjct: 174 TIAKSFQHTKPMASSSSIPSVLTASNSSANSLVSSGSE-SVSARGTSG--SGGTGKYPSS 230

Query: 310 SMAH 299
             A+
Sbjct: 231 RTAN 234


>Z78420-4|CAB01709.1|  298|Caenorhabditis elegans Hypothetical
           protein F45H11.1a protein.
          Length = 298

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 24/64 (37%), Positives = 30/64 (46%)
 Frame = -2

Query: 490 TFAMSFKVCPCALISLSMPSTLTAAIISNSSLTFSGRRLSAKLLGASGILGGESGSMPKL 311
           T A SF+       S S+PS LTA+  S +SL  SG   S    G SG   G +G  P  
Sbjct: 174 TIAKSFQHTKPMASSSSIPSVLTASNSSANSLVSSGSE-SVSARGTSG--SGGTGKYPSS 230

Query: 310 SMAH 299
             A+
Sbjct: 231 RTAN 234


>Z81139-3|CAB03482.1|  520|Caenorhabditis elegans Hypothetical
           protein W05H5.3 protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -2

Query: 184 SRSCLRRGIALLT--FIIIVFADSFLFLSLGYFIFNTLHCSFTSIVYISQI 38
           +++ ++RGI LL   + I+VF++ FLFL  G  +F      F   V  S I
Sbjct: 203 AKNPVKRGIFLLPGIYAIVVFSNVFLFLQDGSKVFRIDEIPFLYTVAASLI 253


>Z74031-11|CAD54138.1|  474|Caenorhabditis elegans Hypothetical
           protein F32D8.12a protein.
          Length = 474

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 516 PDAVIWPDCHEQVEKIVQCASRHNFVIIPFGGGTFGVRARSLA 644
           P  V+ P   EQV +I++  +     ++PFG GT G+   S++
Sbjct: 52  PAVVLEPTNVEQVSEILKLCNDRAIPVVPFGTGT-GLEGGSMS 93


>Z66513-15|CAA91337.3|  487|Caenorhabditis elegans Hypothetical
           protein F54D5.12 protein.
          Length = 487

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 504 FRRIPDAVIWPDCHEQVEKIVQCASRHNFVIIPFGGGT 617
           F+     V++P   E+V  I+   S++   ++P GG T
Sbjct: 63  FKGPGSVVLYPKSTEEVSAILAYCSKNKLAVVPQGGNT 100


>Z66513-5|CAA91334.1|  331|Caenorhabditis elegans Hypothetical
           protein F54D5.8 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 60  EVKEQWRVLKIKYPSDKNKNESANTMMIKVKSA 158
           E+K+ +R + +KY  DKNK   A     ++  A
Sbjct: 19  EIKKAYRKMALKYHPDKNKEAGAENKFKEIAEA 51


>U00052-4|AAK21419.2|  438|Caenorhabditis elegans Hypothetical
           protein K02F3.7 protein.
          Length = 438

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 163 GIALLTFIIIVFADSFLFLSLGYFIFNTL 77
           G+ L TF ++  +  FL + + YF F+TL
Sbjct: 409 GLVLFTFPLLELSLIFLMIMINYFYFSTL 437


>AL110499-6|CAB57915.2|  487|Caenorhabditis elegans Hypothetical
           protein F54D5.12 protein.
          Length = 487

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 504 FRRIPDAVIWPDCHEQVEKIVQCASRHNFVIIPFGGGT 617
           F+     V++P   E+V  I+   S++   ++P GG T
Sbjct: 63  FKGPGSVVLYPKSTEEVSAILAYCSKNKLAVVPQGGNT 100


>AL032626-26|CAA21533.2|  143|Caenorhabditis elegans Hypothetical
           protein Y37D8A.15 protein.
          Length = 143

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +3

Query: 405 LEMIAAVSVDGMDRLIRAHGQTLKDIANVRNNNFRR 512
           L  + A+  +G++RL++ HG  L++  N  +N+  +
Sbjct: 67  LAQLGALVSEGVERLVQTHGLALEEETNEGDNDMEK 102


>AL022289-2|CAA18374.1|  478|Caenorhabditis elegans Hypothetical
           protein ZK1225.2 protein.
          Length = 478

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 196 PYHFSRSCLRRGIALLTF 143
           P HF+  C+RRGI+L +F
Sbjct: 348 PGHFTSQCIRRGISLPSF 365


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,823,820
Number of Sequences: 27780
Number of extensions: 362221
Number of successful extensions: 1295
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)