Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0567
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06580.1 68418.m00743 FAD linked oxidase family protein simil...    42   4e-04
At2g16270.1 68415.m01863 expressed protein  and genefinder; expr...    30   1.6  
At5g59610.1 68418.m07469 DNAJ heat shock N-terminal domain-conta...    29   2.2  
At1g43730.1 68414.m05028 hypothetical protein                          29   3.8  
At4g30920.1 68417.m04390 cytosol aminopeptidase family protein c...    28   5.0  
At1g70300.1 68414.m08088 potassium transporter, putative similar...    28   5.0  
At4g14180.1 68417.m02189 expressed protein ; expression supporte...    28   6.6  
At5g62370.1 68418.m07828 pentatricopeptide (PPR) repeat-containi...    27   8.8  
At4g30910.1 68417.m04389 cytosol aminopeptidase family protein c...    27   8.8  
At4g21180.1 68417.m03063 DNAJ heat shock N-terminal domain-conta...    27   8.8  
At2g24200.1 68415.m02891 cytosol aminopeptidase identical to cyt...    27   8.8  
At1g79940.1 68414.m09342 DNAJ heat shock N-terminal domain-conta...    27   8.8  
At1g23540.1 68414.m02960 protein kinase family protein contains ...    27   8.8  

>At5g06580.1 68418.m00743 FAD linked oxidase family protein similar
           to SP|Q12627 from Kluyveromyces lactis and SP|P32891
           from Saccharomyces cerevisiae; contains Pfam FAD linked
           oxidases, C-terminal domain PF02913, Pfam FAD binding
           domain PF01565
          Length = 567

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 17/46 (36%), Positives = 29/46 (63%)
 Frame = +3

Query: 513 IPDAVIWPDCHEQVEKIVQCASRHNFVIIPFGGGTFGVRARSLAPR 650
           IPD V++P   E+V KI++  + +   I+P+GG T  +   +LAP+
Sbjct: 145 IPDVVVFPRSEEEVSKILKSCNEYKVPIVPYGGAT-SIEGHTLAPK 189


>At2g16270.1 68415.m01863 expressed protein  and genefinder;
           expression supported by MPSS
          Length = 759

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/81 (24%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
 Frame = +3

Query: 345 IPEAPSSFAESRLPENVKDELEMIAAVSVDGMDRLIRAHGQTLKDIANVRNNNFR-RIPD 521
           IP+  + FA++   + + D+L  +   S+  MD+LI   G+  ++ + ++ +N    + D
Sbjct: 343 IPKEITEFAKANNLDQLSDKLWTLTESSLVYMDKLISRLGRGNEEYSQLQFHNLTYTLED 402

Query: 522 AVIW-PDCHEQVEKIVQCASR 581
           + ++ P C E +++ +Q  SR
Sbjct: 403 STVFKPTCVEIIQEPLQENSR 423


>At5g59610.1 68418.m07469 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9UXR9 Chaperone
           protein dnaJ (Heat shock protein 40 Methanosarcina
           thermophila, SP|Q9QYI6 DnaJ homolog subfamily B member 9
           Mus musculus; contains Pfam profile PF00226 DnaJ domain
          Length = 268

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 60  EVKEQWRVLKIKYPSDKNKNESANTMMIKVKSA 158
           ++K  +R L +KY  D NK  +A    +K+K A
Sbjct: 88  DIKRAYRKLALKYHPDVNKEANAQEKFLKIKHA 120


>At1g43730.1 68414.m05028 hypothetical protein
          Length = 320

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -1

Query: 446 SIHAVHAYCGDHLQFILNVFRQATFCKTTWRFRNFGRGIWIYAKVVY 306
           SI AV   C  H +   ++F +  FC   WRF      ++  A+++Y
Sbjct: 188 SIPAVCLLCNSHDESRAHLFFECPFCGAVWRFFTGRANLFPPAQLMY 234


>At4g30920.1 68417.m04390 cytosol aminopeptidase family protein
           contains Pfam profiles: PF00883 cytosol aminopeptidase
           family catalytic domain, PF02789: cytosol aminopeptidase
           family N-terminal domain
          Length = 583

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/72 (25%), Positives = 36/72 (50%)
 Frame = +3

Query: 411 MIAAVSVDGMDRLIRAHGQTLKDIANVRNNNFRRIPDAVIWPDCHEQVEKIVQCASRHNF 590
           MI+   +   D L  ++G+T+ ++ N        + DA+++  C++ V+K+V  A+    
Sbjct: 410 MISGTGMRPGDVLTASNGKTI-EVNNTDAEGRLTLADALVYA-CNQGVDKVVDLATLTGA 467

Query: 591 VIIPFGGGTFGV 626
            II  G    G+
Sbjct: 468 CIIALGTSMAGI 479


>At1g70300.1 68414.m08088 potassium transporter, putative similar to
           potassium transporter HAK2p [Mesembryanthemum
           crystallinum] gi|14091471|gb|AAK53759; KUP/HAK/KT
           Transporter family member, PMID:11500563; contains Pfam
           profile PF02705: K+ potassium transporter
          Length = 782

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -2

Query: 193 YHFSRSCLRRG-IALLTFIIIVFADSFLFLSLGYFIFNTLHCSFTSIVYISQI 38
           Y F +    RG ++L   ++ +     +F  LG+F   ++  +FTS+VY S I
Sbjct: 260 YKFLKKTQSRGWMSLGGILLCITGSEAMFADLGHFSQLSIKIAFTSLVYPSLI 312


>At4g14180.1 68417.m02189 expressed protein ; expression supported
           by MPSS
          Length = 1268

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 215 HVQIQQ*ECRLHREQILNSREMLTPPTAVGHR 310
           H Q+Q  +  LH     ++ + L+PP A GHR
Sbjct: 5   HSQLQNSDHLLHESMADSNHQSLSPPCANGHR 36


>At5g62370.1 68418.m07828 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 982

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 505 KLLFLTFAMSFKVCPCALISLSMPSTLTAAIISNSSLTFSGRRLSAKL-LGASGIL 341
           K L   F  S K   CAL S   PST +AA+ S +S     R LS  + LG  G+L
Sbjct: 5   KALCYRFFKSRKATTCALSSELFPST-SAAVFSAASGDHRSRCLSLIVKLGRRGLL 59


>At4g30910.1 68417.m04389 cytosol aminopeptidase family protein
           contains Pfam profiles: PF00883 cytosol aminopeptidase
           family catalytic domain, PF02789: cytosol aminopeptidase
           family N-terminal domain
          Length = 581

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/76 (22%), Positives = 39/76 (51%)
 Frame = +3

Query: 411 MIAAVSVDGMDRLIRAHGQTLKDIANVRNNNFRRIPDAVIWPDCHEQVEKIVQCASRHNF 590
           MI+   +   D +  ++G+T+ ++ +  +     + DA+++  C++ V+KIV  A+    
Sbjct: 409 MISGTGMRPGDVITASNGKTI-EVNDTDSEGRLTLADALVYA-CNQGVDKIVDIATLTGE 466

Query: 591 VIIPFGGGTFGVRARS 638
           +I+  G    G+   S
Sbjct: 467 IIVALGPSMAGMYTAS 482


>At4g21180.1 68417.m03063 DNAJ heat shock N-terminal
           domain-containing protein / sec63 domain-containing
           protein similar to SP|Q9UGP8 Translocation protein SEC63
           homolog {Homo sapiens}; contains Pfam profiles PF00226
           DnaJ domain, PF02889 Sec63 domain
          Length = 661

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 60  EVKEQWRVLKIKYPSDKNKNESANTMMIK 146
           E+K+ +R L I+Y  DKN +  AN   ++
Sbjct: 114 EIKKAYRRLSIQYHPDKNPDPEANKYFVE 142


>At2g24200.1 68415.m02891 cytosol aminopeptidase identical to
           cytosol aminopeptidase SP:P30184 from [Arabidopsis
           thaliana]; contains Pfam profiles: PF00883 cytosol
           aminopeptidase family catalytic domain, PF02789: cytosol
           aminopeptidase family N-terminal domain
          Length = 520

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/72 (23%), Positives = 36/72 (50%)
 Frame = +3

Query: 411 MIAAVSVDGMDRLIRAHGQTLKDIANVRNNNFRRIPDAVIWPDCHEQVEKIVQCASRHNF 590
           MI+   +   D +  ++G+T+ ++ N        + DA+++  C++ V+KIV  A+    
Sbjct: 347 MISGTGMRPGDVITASNGKTI-EVNNTDAEGRLTLADALVYA-CNQGVDKIVDLATLTGA 404

Query: 591 VIIPFGGGTFGV 626
            +I  G    G+
Sbjct: 405 CVIALGTSMAGI 416


>At1g79940.1 68414.m09342 DNAJ heat shock N-terminal
           domain-containing protein / sec63 domain-containing
           protein similar to SP|Q9UGP8 Translocation protein SEC63
           homolog {Homo sapiens}; contains Pfam profiles PF00226
           DnaJ domain, PF02889 Sec63 domain
          Length = 702

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 60  EVKEQWRVLKIKYPSDKNKNESANTMMIK 146
           E+K+ +R L I+Y  DKN +  AN   ++
Sbjct: 114 EIKKAYRRLSIQYHPDKNPDPEANKYFVE 142


>At1g23540.1 68414.m02960 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 174 QDLLKWYGWGYKDTMFKFSSESAAFTGNRYSIAGKCLPH 290
           QD  K Y  G   +M+  S +  +  GN Y  AG   PH
Sbjct: 300 QDPGKGYSSGPNGSMYNNSQQQQSSMGNSYGTAGGGYPH 338


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,906,344
Number of Sequences: 28952
Number of extensions: 336840
Number of successful extensions: 1112
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)