Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0564
         (515 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0279 - 23794964-23795111,23795486-23795634,23796120-237962...    77   1e-14
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731...    77   1e-14
07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689...    75   5e-14
07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938...    59   2e-09
01_05_0105 - 18155135-18155297,18155379-18155515,18155621-181557...    38   0.004

>05_05_0279 -
           23794964-23795111,23795486-23795634,23796120-23796221,
           23796309-23796384,23796578-23796588
          Length = 161

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 41/97 (42%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
 Frame = +1

Query: 13  LCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKG-Q 189
           LC +SG KIYPG G   ++ D + F F NSKC+     R  P K+TWT +YR++ KK   
Sbjct: 7   LCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIH 66

Query: 190 EEEXXXXXXXXXXXXXXXIVGASLIDIMAKRNMKPEV 300
            E                IVGASL  I  KR  KPEV
Sbjct: 67  AEAVKKRRRTTKKPYSRSIVGASLEVIQKKRAEKPEV 103


>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
            34673237-34675178,34675588-34675658,34676158-34676307,
            34676963-34677038,34677131-34677232,34677707-34677855,
            34678214-34678364
          Length = 1172

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 40/97 (41%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
 Frame = +1

Query: 13   LCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKG-Q 189
            LC +SG KIYPG G   ++ D + F F NSKC+     R  P K+TWT +YR++ KK   
Sbjct: 1017 LCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIH 1076

Query: 190  EEEXXXXXXXXXXXXXXXIVGASLIDIMAKRNMKPEV 300
             E                IVGA+L  I  KR+ KPEV
Sbjct: 1077 AEAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEV 1113


>07_01_0849 +
           6896930-6896996,6897453-6897474,6897615-6897690,
           6897775-6897876,6898156-6898304,6898637-6898784
          Length = 187

 Score = 74.5 bits (175), Expect = 5e-14
 Identities = 40/97 (41%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
 Frame = +1

Query: 13  LCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKG-Q 189
           LC +SG KIYPG G   ++ D + F F NSKC+     R  P K+TWT +YR++ KK   
Sbjct: 33  LCRFSGAKIYPGKGIRFIRADSQVFLFSNSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIH 92

Query: 190 EEEXXXXXXXXXXXXXXXIVGASLIDIMAKRNMKPEV 300
            E                IVGA+L  I  KR  KPEV
Sbjct: 93  AEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEV 129


>07_01_1199 +
           11391638-11391718,11393477-11393590,11393690-11393826,
           11393905-11394064
          Length = 163

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 25/51 (49%), Positives = 29/51 (56%)
 Frame = +1

Query: 16  CAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYR 168
           C +    +YPGHG   V+ D K F F  SKC     M+RNPRKV WT  YR
Sbjct: 6   CWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR 56


>01_05_0105 -
           18155135-18155297,18155379-18155515,18155621-18155734,
           18155768-18155806,18156838-18156993
          Length = 202

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = +1

Query: 85  FTFLNSKCEAAHLMRRNPRKVTWTVLYR 168
           F F  SKC     M+RNPRKV WT  YR
Sbjct: 67  FRFCRSKCHKNFKMKRNPRKVKWTKAYR 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,440,819
Number of Sequences: 37544
Number of extensions: 191482
Number of successful extensions: 424
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)