Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0564
         (515 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)       128   3e-30
SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07)        92   3e-19
SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)        89   2e-18
SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)        89   2e-18
SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)         89   2e-18
SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)         89   2e-18
SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07)        87   1e-17
SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07)        86   2e-17
SB_12479| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.046
SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  

>SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)
          Length = 154

 Score =  128 bits (309), Expect = 3e-30
 Identities = 60/100 (60%), Positives = 69/100 (69%)
 Frame = +1

Query: 1   VNIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 180
           + + LC YSGYKIYPGHGK  V+ DGK F FLN +CE A LMRRNPR+VTWTVLYRRK K
Sbjct: 1   MKLELCNYSGYKIYPGHGKRYVRQDGKVFNFLNKRCERALLMRRNPREVTWTVLYRRKHK 60

Query: 181 KGQEEEXXXXXXXXXXXXXXXIVGASLIDIMAKRNMKPEV 300
           KG +EE               + GASL +I+AKRN KPEV
Sbjct: 61  KGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 100


>SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07)
          Length = 139

 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 44/78 (56%), Positives = 51/78 (65%)
 Frame = +1

Query: 67  KVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXI 246
           K  GK F +LN +CE A LMRRNPR+VTWTVLYRRK KKG +EE               +
Sbjct: 38  KFQGKVFNYLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSV 97

Query: 247 VGASLIDIMAKRNMKPEV 300
            GASL +I+AKRN KPEV
Sbjct: 98  QGASLDNILAKRNQKPEV 115


>SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 113

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 43/74 (58%), Positives = 49/74 (66%)
 Frame = +1

Query: 79  KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGAS 258
           K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE               + GAS
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66

Query: 259 LIDIMAKRNMKPEV 300
           L +I+AKRN KPEV
Sbjct: 67  LDNILAKRNQKPEV 80


>SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 90

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 43/74 (58%), Positives = 49/74 (66%)
 Frame = +1

Query: 79  KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGAS 258
           K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE               + GAS
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66

Query: 259 LIDIMAKRNMKPEV 300
           L +I+AKRN KPEV
Sbjct: 67  LDNILAKRNQKPEV 80


>SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 90

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 43/74 (58%), Positives = 49/74 (66%)
 Frame = +1

Query: 79  KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGAS 258
           K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE               + GAS
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66

Query: 259 LIDIMAKRNMKPEV 300
           L +I+AKRN KPEV
Sbjct: 67  LDNILAKRNQKPEV 80


>SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 90

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 43/74 (58%), Positives = 49/74 (66%)
 Frame = +1

Query: 79  KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGAS 258
           K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE               + GAS
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66

Query: 259 LIDIMAKRNMKPEV 300
           L +I+AKRN KPEV
Sbjct: 67  LDNILAKRNQKPEV 80


>SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07)
          Length = 104

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 42/74 (56%), Positives = 48/74 (64%)
 Frame = +1

Query: 79  KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGAS 258
           K F FLN +CE A LMRRNPR+VTWTVLYRR  KKG +EE               + GAS
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRMHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66

Query: 259 LIDIMAKRNMKPEV 300
           L +I+AKRN KPEV
Sbjct: 67  LDNILAKRNQKPEV 80


>SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07)
          Length = 90

 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 42/74 (56%), Positives = 48/74 (64%)
 Frame = +1

Query: 79  KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGAS 258
           K F FLN +CE A LMRRNPR+VTWTVLYR K KKG +EE               + GAS
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRCKHKKGTQEEVSKKRTRRNIKFQRSVQGAS 66

Query: 259 LIDIMAKRNMKPEV 300
           L +I+AKRN KPEV
Sbjct: 67  LDNILAKRNQKPEV 80


>SB_12479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 52

 Score = 34.7 bits (76), Expect = 0.046
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +1

Query: 178 KKGQEEEXXXXXXXXXXXXXXXIVGASLIDIMAKRNMKPEV 300
           KKG +EE               + GASL +I+AKRN KPEV
Sbjct: 2   KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 42


>SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 124 MRRNPRKVTWTVLYRR 171
           M+RNPRK+ WT  +R+
Sbjct: 1   MKRNPRKMKWTKAFRK 16


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,803,735
Number of Sequences: 59808
Number of extensions: 213182
Number of successful extensions: 441
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)