Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0564
         (515 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    23   4.6  
AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    23   6.1  
AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    23   6.1  

>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
           channel alpha subunitprotein.
          Length = 2139

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 218 LVRFFACSSSWPFLNL 171
           L+R F  + SWP LNL
Sbjct: 903 LLRVFKLAKSWPTLNL 918


>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 6.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 4   NIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCE 111
           N G C Y    + PG  K+  K+D   F F + +CE
Sbjct: 115 NNGSCLY----VPPGIFKSTCKIDITWFPFDDQRCE 146


>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 23.0 bits (47), Expect = 6.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 4   NIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCE 111
           N G C Y    + PG  K+  K+D   F F + +CE
Sbjct: 147 NNGSCLY----VPPGIFKSTCKIDITWFPFDDQRCE 178


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 398,782
Number of Sequences: 2352
Number of extensions: 6997
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 46937349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)