Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0564
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal pr...    86   1e-17
Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical pr...    47   9e-06
Z82263-6|CAJ76936.1|  383|Caenorhabditis elegans Hypothetical pr...    31   0.65 
Z82263-3|CAB62793.2|  451|Caenorhabditis elegans Hypothetical pr...    31   0.65 
Z82263-2|CAE46670.1|  445|Caenorhabditis elegans Hypothetical pr...    31   0.65 
U23147-4|AAC46689.1|  464|Caenorhabditis elegans Hypothetical pr...    28   4.6  

>AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 24.1 protein.
          Length = 159

 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 44/98 (44%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
 Frame = +1

Query: 1   VNIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 180
           + +  C YSGYKI+PGHGK +V+ DGK   FL+ K      +RRNPR + WTVLYR K K
Sbjct: 1   MKVETCVYSGYKIHPGHGKRLVRTDGKVQIFLSGKALKGAKLRRNPRDIRWTVLYRIKNK 60

Query: 181 K---GQEEEXXXXXXXXXXXXXXXIVGASLIDIMAKRN 285
           K   GQE+                + G SL  I+AKRN
Sbjct: 61  KGTHGQEQVTRKKTKKSVQVVNRAVAGLSLDAILAKRN 98


>Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical
           protein C03D6.8 protein.
          Length = 162

 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = +1

Query: 1   VNIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRR 171
           + I  C +    IYPGHG   V+ D   F F  S+C      ++NPRK+ +T   RR
Sbjct: 1   MRIEKCYFCSSPIYPGHGIQFVRNDSTVFKFCRSRCNKLFKKKKNPRKLRFTKAARR 57


>Z82263-6|CAJ76936.1|  383|Caenorhabditis elegans Hypothetical
           protein C47A4.2c protein.
          Length = 383

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 20/83 (24%), Positives = 36/83 (43%)
 Frame = -1

Query: 341 SFAALMACSLCALRTSGFILRLAIMSISEAPTIARWNFWVLLVRFFACSSSWPFLNLRLY 162
           S A ++  ++C   TS   +   +   ++A T+A   F + L+  F C  SW F     +
Sbjct: 125 SNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWFCKKMDF 184

Query: 161 RTVHVTLRGFLLIKWAASHFEFR 93
              +V+    L      S F++R
Sbjct: 185 YKYYVSKGNRLRAAQEQSSFDYR 207


>Z82263-3|CAB62793.2|  451|Caenorhabditis elegans Hypothetical
           protein C47A4.2b protein.
          Length = 451

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 20/83 (24%), Positives = 36/83 (43%)
 Frame = -1

Query: 341 SFAALMACSLCALRTSGFILRLAIMSISEAPTIARWNFWVLLVRFFACSSSWPFLNLRLY 162
           S A ++  ++C   TS   +   +   ++A T+A   F + L+  F C  SW F     +
Sbjct: 193 SNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWFCKKMDF 252

Query: 161 RTVHVTLRGFLLIKWAASHFEFR 93
              +V+    L      S F++R
Sbjct: 253 YKYYVSKGNRLRAAQEQSSFDYR 275


>Z82263-2|CAE46670.1|  445|Caenorhabditis elegans Hypothetical
           protein C47A4.2a protein.
          Length = 445

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 20/83 (24%), Positives = 36/83 (43%)
 Frame = -1

Query: 341 SFAALMACSLCALRTSGFILRLAIMSISEAPTIARWNFWVLLVRFFACSSSWPFLNLRLY 162
           S A ++  ++C   TS   +   +   ++A T+A   F + L+  F C  SW F     +
Sbjct: 187 SNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWFCKKMDF 246

Query: 161 RTVHVTLRGFLLIKWAASHFEFR 93
              +V+    L      S F++R
Sbjct: 247 YKYYVSKGNRLRAAQEQSSFDYR 269


>U23147-4|AAC46689.1|  464|Caenorhabditis elegans Hypothetical
           protein C18H9.5 protein.
          Length = 464

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 329 LMACSLCALRTSGFILRLAIMSISEAPTIARWNFWVLLVRFFACSSSWPF 180
           +MA    +   S FIL + I  I    + A W+ + L V FF   ++ PF
Sbjct: 397 IMAVISMSSWVSAFILPIVIGVICPTNSHAEWSRFYLFVAFFVVCTNLPF 446


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,785,926
Number of Sequences: 27780
Number of extensions: 161686
Number of successful extensions: 291
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)