Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0564
(515 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 1.4
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 23 1.9
AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase ... 23 2.5
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 22 4.3
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 21 5.7
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 21 5.7
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 21 5.7
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 21 5.7
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 21 5.7
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 21 7.5
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 21 7.5
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 21 7.5
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 21 7.5
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.4 bits (48), Expect = 1.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 4 NIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCE 111
N G C Y + PG K+ K+D F F + +CE
Sbjct: 132 NNGTCLY----VPPGIFKSTCKIDITWFPFDDQRCE 163
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 23.0 bits (47), Expect = 1.9
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 3 EYRTLRL*WIQNISRP 50
EYR L + W++N+ RP
Sbjct: 106 EYRLLEVDWLKNMWRP 121
>AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase
protein.
Length = 510
Score = 22.6 bits (46), Expect = 2.5
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1
Query: 163 YRRKFKKGQEEE 198
YRR FKK QEE+
Sbjct: 259 YRRNFKKMQEEK 270
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 21.8 bits (44), Expect = 4.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 3 EYRTLRL*WIQNISRP 50
+YR L + W+ NI RP
Sbjct: 75 DYRILDVDWLHNIWRP 90
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 5.7
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 153 PCYFTRIPPHQMGGFTF*IQE 91
P Y+ PP MG F IQE
Sbjct: 351 PVYYGNFPPRPMGPFVS-IQE 370
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 5.7
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 153 PCYFTRIPPHQMGGFTF*IQE 91
P Y+ PP MG F IQE
Sbjct: 351 PVYYGNFPPRPMGPFVS-IQE 370
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 5.7
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 153 PCYFTRIPPHQMGGFTF*IQE 91
P Y+ PP MG F IQE
Sbjct: 351 PVYYGNFPPRPMGPFVS-IQE 370
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 5.7
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 153 PCYFTRIPPHQMGGFTF*IQE 91
P Y+ PP MG F IQE
Sbjct: 351 PVYYGNFPPRPMGPFVS-IQE 370
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.4 bits (43), Expect = 5.7
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 153 PCYFTRIPPHQMGGFTF*IQE 91
P Y+ PP MG F IQE
Sbjct: 340 PVYYGNFPPRPMGPFVS-IQE 359
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.0 bits (42), Expect = 7.5
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = -3
Query: 153 PCYFTRIPPHQMGGF 109
P Y+ PP MG F
Sbjct: 118 PVYYGNFPPRPMGPF 132
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.0 bits (42), Expect = 7.5
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = -3
Query: 153 PCYFTRIPPHQMGGF 109
P Y+ PP MG F
Sbjct: 118 PVYYGNFPPRPMGPF 132
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.0 bits (42), Expect = 7.5
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = -3
Query: 153 PCYFTRIPPHQMGGF 109
P Y+ PP MG F
Sbjct: 118 PVYYGNFPPRPMGPF 132
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.0 bits (42), Expect = 7.5
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = -3
Query: 153 PCYFTRIPPHQMGGF 109
P Y+ PP MG F
Sbjct: 118 PVYYGNFPPRPMGPF 132
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,882
Number of Sequences: 438
Number of extensions: 1982
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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