Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0563
         (354 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6C6T2 Cluster: Similar to sp|P34244 Saccharomyces cere...    33   1.9  
UniRef50_Q01HQ7 Cluster: OSIGBa0153E02-OSIGBa0093I20.18 protein;...    32   3.2  
UniRef50_Q8NT32 Cluster: Cation transport ATPases; n=6; Bacteria...    31   5.7  
UniRef50_Q0A7L0 Cluster: Sensor protein; n=1; Alkalilimnicola eh...    31   7.5  
UniRef50_Q022Z9 Cluster: OmpA/MotB domain protein precursor; n=1...    31   7.5  

>UniRef50_Q6C6T2 Cluster: Similar to sp|P34244 Saccharomyces
           cerevisiae YKL101w HSL1 ser/thr protein kinase; n=1;
           Yarrowia lipolytica|Rep: Similar to sp|P34244
           Saccharomyces cerevisiae YKL101w HSL1 ser/thr protein
           kinase - Yarrowia lipolytica (Candida lipolytica)
          Length = 1058

 Score = 32.7 bits (71), Expect = 1.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 308 MVGEPRRSHPSPAVVSAMDVRIIPLHRSASSN 213
           +V  PRR  P+P V S  D  ++P+H+   +N
Sbjct: 809 VVSAPRRPAPAPPVQSVADTMVLPMHQQQQNN 840


>UniRef50_Q01HQ7 Cluster: OSIGBa0153E02-OSIGBa0093I20.18 protein;
           n=11; Oryza sativa|Rep: OSIGBa0153E02-OSIGBa0093I20.18
           protein - Oryza sativa (Rice)
          Length = 535

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 175 ISSTRMSEKRGVRFEEAERCKGIILTSIALTTAGLGWLLRGSPTMMSAVA 324
           +SS ++ +K G   E+  R  GI+   + L+T  L WL+  S T  S  A
Sbjct: 186 VSSNQLDDKDGREEEQVVRGLGILPAQLELSTKELPWLVGDSATQRSRFA 235


>UniRef50_Q8NT32 Cluster: Cation transport ATPases; n=6;
           Bacteria|Rep: Cation transport ATPases - Corynebacterium
           glutamicum (Brevibacterium flavum)
          Length = 650

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 26/86 (30%), Positives = 37/86 (43%)
 Frame = +1

Query: 73  VNSYSKIAIVTLKLAHCLFV*RIRV*KICTRSNRISSTRMSEKRGVRFEEAERCKGIILT 252
           VN  + + IV  KLAH     +I        +NR    RM+++ G  +           T
Sbjct: 218 VNGDTPLTIVATKLAHDSRYAQIVGVLHEAENNRPEMRRMADRLGAWY-----------T 266

Query: 253 SIALTTAGLGWLLRGSPTMMSAVATL 330
            IAL   GLGW++ G P    AV  +
Sbjct: 267 VIALALGGLGWIVSGDPVRFLAVVVV 292


>UniRef50_Q0A7L0 Cluster: Sensor protein; n=1; Alkalilimnicola
           ehrlichei MLHE-1|Rep: Sensor protein - Alkalilimnicola
           ehrlichei (strain MLHE-1)
          Length = 687

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +1

Query: 172 RISSTR---MSEKRGVRFEEAERCKGIILTSIALTTAGLGWLLRGSPTMMSAVAT 327
           R+S+ R   + +K  V  E+A RC G  L  +A   AG   +L G P     VAT
Sbjct: 285 RLSTDRRAAVEQKCAVLLEQASRCLGADLAVVARRQAGQWTVLHGHPASHLPVAT 339


>UniRef50_Q022Z9 Cluster: OmpA/MotB domain protein precursor; n=1;
           Solibacter usitatus Ellin6076|Rep: OmpA/MotB domain
           protein precursor - Solibacter usitatus (strain
           Ellin6076)
          Length = 605

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +2

Query: 122 VYLSREFGCKRYAPDQIESQVPGCQRREGFDLKRPSGVRGLSS 250
           V ++R  G +RYAPD  +  V G    EG+ LK  SG + + +
Sbjct: 223 VQIARWTGAERYAPDTYQKAVNGLANAEGY-LKGKSGSKPIGT 264


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 363,247,776
Number of Sequences: 1657284
Number of extensions: 6718644
Number of successful extensions: 17278
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17277
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 11514999177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)