Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0563
         (354 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    26   0.13 
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    26   0.13 
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    26   0.13 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.2  

>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 25.8 bits (54), Expect = 0.13
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 197 SDILVLEILFDLVHIFYT 144
           S  +V  +LF L+H++YT
Sbjct: 101 SSFVVANVLFQLIHVYYT 118


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 25.8 bits (54), Expect = 0.13
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 197 SDILVLEILFDLVHIFYT 144
           S  +V  +LF L+H++YT
Sbjct: 101 SSFVVANVLFQLIHVYYT 118


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 25.8 bits (54), Expect = 0.13
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 197 SDILVLEILFDLVHIFYT 144
           S  +V  +LF L+H++YT
Sbjct: 421 SSFVVANVLFQLIHVYYT 438


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 336 SSQRRNSAHHGRGTA*KPSQSSCCQRYGREDN 241
           S  R+NS+  G G    P  SS  +R G +++
Sbjct: 742 SRSRQNSSFPGHGPTTAPMGSSILKRLGIDES 773


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,616
Number of Sequences: 336
Number of extensions: 1586
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7087595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)