Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0563
         (354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   1.1  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    26   2.0  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    25   4.5  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    24   6.0  

>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = -3

Query: 226 RPLQIEPLSSLTSWYLRFYLIWCISFTPEF 137
           +PL ++ +++  SW+L  +++W +  T  F
Sbjct: 125 KPLTVDNVTAFFSWWLVSHIVWIVVGTTTF 154


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -3

Query: 346 SIDKLPASQQRSSWSGNRVEAIPVQLLSALWT*G*SPYTARPLQIEPLSSLTSWYLRFYL 167
           SID   +S++  SW GN  ++ P+   S L     +P    P    P+S  T  +   YL
Sbjct: 43  SIDSFISSKEEISWCGN--QSTPIATKSHLSC--INPQYVNPFDTSPVSVDTE-FQDTYL 97

Query: 166 IWCISFT-PEFSRQ 128
           +   SF  P FS +
Sbjct: 98  LDAPSFAQPHFSER 111


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 244 ILTSIALTTAGLGWLLRGS 300
           +LTS   T  GL WL  GS
Sbjct: 623 VLTSAGTTLLGLSWLFSGS 641


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 235 YTARPLQIEPLSSLTSWYLRF 173
           YT  P  +  +  +T+WY+RF
Sbjct: 713 YTVVPQLLGLIEEMTNWYIRF 733


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,464,527
Number of Sequences: 5004
Number of extensions: 27805
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)