Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0563
         (354 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0639 + 23055223-23055678,23055788-23056627                       35   0.021
04_04_0559 - 26234106-26235169,26235437-26235452                       32   0.15 
01_06_1842 - 40278875-40280131                                         27   4.2  
03_05_0313 - 23022407-23022808                                         27   5.6  
02_05_1127 + 34292894-34293284,34293948-34295443                       27   5.6  
01_07_0346 + 42889121-42890406,42896115-42896118                       27   5.6  
11_04_0296 + 15992285-15992385,15992792-15993011                       26   9.8  
03_06_0249 + 32638112-32639140                                         26   9.8  
03_05_0145 + 21254448-21255488                                         26   9.8  
01_06_0210 - 27559090-27559239,27560445-27560567,27561069-275611...    26   9.8  

>06_03_0639 + 23055223-23055678,23055788-23056627
          Length = 431

 Score = 34.7 bits (76), Expect = 0.021
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
 Frame = -2

Query: 332 PSVATALIMVGEPRRSHPSPAVVSAMDVRIIPLHRSASSNRTPLFSDI----LVLEILFD 165
           P  A  +  VGE  R   +PA+  A     IP   SA+    P+ +++    L ++I  D
Sbjct: 175 PGAAQFMTAVGEIARGRAAPALAPAWGRDAIPCPPSAAVGPLPVPTELRLQYLAMDISTD 234

Query: 164 LVHIFYTRIL-*TNKQCASFNVTIA 93
            +  F  R L  T  +C++F V IA
Sbjct: 235 YIDHFKARFLEQTGHRCSAFEVLIA 259


>04_04_0559 - 26234106-26235169,26235437-26235452
          Length = 359

 Score = 31.9 bits (69), Expect = 0.15
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 175 ISSTRMSEKRGVRFEEAERCKGIILTSIALTTAGLGWLLRGSPTMMSAVA 324
           +SS ++ +K G   E+  R  GI+   + L+T  L WL+  S T  S  A
Sbjct: 10  VSSNQLDDKDGREEEQVVRGLGILPAQLELSTKELPWLVGDSATQRSRFA 59


>01_06_1842 - 40278875-40280131
          Length = 418

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 332 PSVATALIMVGEPRRSHPSPAVVSAMDVRIIPLH 231
           PS+ATA         + P+PA  ++M  R++P H
Sbjct: 262 PSIATAACAAAAAAATAPAPAPATSMLRRLVPGH 295


>03_05_0313 - 23022407-23022808
          Length = 133

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 302 GEPRRSHPSPAVVSAMDVRIIPLHRSASSNRTP 204
           G  + SHP   +V+ +D      HR    NRTP
Sbjct: 73  GNDQSSHPFDGIVAHLDGSDCTSHRMEEVNRTP 105


>02_05_1127 + 34292894-34293284,34293948-34295443
          Length = 628

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 302 GEPRRSHPSPAVVSAMDVRIIPLHRSASSNRTP 204
           GEP RS P PA   A  V  +P    ++++ TP
Sbjct: 220 GEPFRSSPPPAAADADTVEGLPEGAESTADVTP 252


>01_07_0346 + 42889121-42890406,42896115-42896118
          Length = 429

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -1

Query: 330 QRRNSAHHGRGTA*KPSQSSCCQRYGREDNPLTP 229
           +RRNS    R T    S S    R+GRED P  P
Sbjct: 182 RRRNSRRTPRATE-GASSSRVSPRHGREDQPSVP 214


>11_04_0296 + 15992285-15992385,15992792-15993011
          Length = 106

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 151 KICTRSNRISSTRMSEKRGVRFEEAERCKGIILTSIALTTAGLG 282
           +ICT SN ++S  ++   G     A   +  ILT+  L T+G G
Sbjct: 39  RICTTSNLVASGSIAGDYGTGEPTAHNYRMGILTTEDLATSGSG 82


>03_06_0249 + 32638112-32639140
          Length = 342

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 293 RRSHPSPAVVSAMDVRIIPLHR 228
           R +H  PAVV + D R+ P HR
Sbjct: 104 RLAHELPAVVLSADYRLAPEHR 125


>03_05_0145 + 21254448-21255488
          Length = 346

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 330 QRRNSAHHGRGTA*KPSQSSCCQRYGREDNPLTPLGLFKSNPSLL 196
           QRR     G G A  PS +S  +RYG  ++   P    +  P+++
Sbjct: 127 QRRPKEAAGNGRARSPSPASAQRRYGGGEHLAPPTRPRREQPAVV 171


>01_06_0210 -
           27559090-27559239,27560445-27560567,27561069-27561128,
           27562045-27562068,27562313-27562653,27562684-27563731
          Length = 581

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 288 KPSQSSCCQRYGREDNPLTPLGLFKSNPSLL 196
           +P   S  + Y R   PL  L LF+S PS L
Sbjct: 102 EPPFLSLLRAYSRAHQPLAALHLFRSAPSAL 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,888,291
Number of Sequences: 37544
Number of extensions: 182526
Number of successful extensions: 543
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)