Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0563
         (354 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21)                 28   2.5  
SB_8241| Best HMM Match : PDEase_I (HMM E-Value=0)                     28   2.5  
SB_38778| Best HMM Match : HRM (HMM E-Value=4.6)                       27   3.3  
SB_30091| Best HMM Match : MobB (HMM E-Value=0.1)                      27   5.8  
SB_18586| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.7  
SB_45384| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.7  
SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.7  

>SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21)
          Length = 791

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 352 HRSIDKLPASQQRSSWSGNRVEAIPVQLLSAL 257
           H  I+ LPA     +  GN +  +P +LLS+L
Sbjct: 277 HNHIENLPAGIDEFNIEGNNIAELPEKLLSSL 308


>SB_8241| Best HMM Match : PDEase_I (HMM E-Value=0)
          Length = 388

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -3

Query: 331 PASQQRSSWSGNRVEAI 281
           PAS +RSSW G R EAI
Sbjct: 303 PASIRRSSWQGTRKEAI 319


>SB_38778| Best HMM Match : HRM (HMM E-Value=4.6)
          Length = 331

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 238 PYTARPLQIEPLSSLTSWYLRFYL 167
           P T+R L   PL  +T W+LR YL
Sbjct: 120 PRTSRCLSRRPLYPVTPWFLRRYL 143


>SB_30091| Best HMM Match : MobB (HMM E-Value=0.1)
          Length = 626

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 229 ARPLQIEPLSSLTSWYLRFYLIWCIS 152
           AR L IE +     W+LR  ++W +S
Sbjct: 521 ARELNIETMKCSERWFLRAKVLWLVS 546


>SB_18586| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 751

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 229 ARPLQIEPLSSLTSWYLRFYLIWCIS 152
           AR L IE +     W+LR  ++W +S
Sbjct: 518 ARELNIETMKCSERWFLRAKVLWLVS 543


>SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1516

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +1

Query: 184 TRMSEKRGVRFEEAERCKGIILTSIALTTAGLGWLLRGSPTMMSAVATLGAYLLTGD 354
           T   ++ G RF     C  ++  SIA TT  +  ++    T+  AV T G Y +  D
Sbjct: 706 THFCQQEG-RFLVRVNCSNLVSYSIASTTVVVHRMIAPVMTLDPAVITAGQYYMDTD 761


>SB_45384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 288 KPSQSSCCQRYGREDN 241
           KPSQS  C+R+ R+D+
Sbjct: 44  KPSQSQACERWHRDDS 59


>SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 301 GNRVEAIPVQLLSALWT*G*SPYTARPLQIEPLSSLTSWYLRFYLI-WCISF 149
           G+ VE   + + S LW    +P   R   ++ L  L   YL  YLI W +SF
Sbjct: 63  GSVVERKDLFITSKLWNTKHNPKDVRSNCVDSLKDLGLDYLDLYLIHWPLSF 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,200,131
Number of Sequences: 59808
Number of extensions: 209995
Number of successful extensions: 372
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)