Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0563
         (354 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu...    27   3.8  
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu...    27   3.8  
Z95559-15|CAB63361.1|  917|Caenorhabditis elegans Hypothetical p...    27   5.0  
Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform a
           protein.
          Length = 1081

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -2

Query: 335 APSVATALIMVGEPRRSHPSPAVVSAMDVRIIPLHRSASSNR 210
           AP++  + ++   P R H   A  S M  + +PLH+  + ++
Sbjct: 225 APNIGASQMVQQAPSRGHTGAAPASRMAQQPVPLHQGVAPHQ 266


>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform b
           protein.
          Length = 1647

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -2

Query: 335 APSVATALIMVGEPRRSHPSPAVVSAMDVRIIPLHRSASSNR 210
           AP++  + ++   P R H   A  S M  + +PLH+  + ++
Sbjct: 225 APNIGASQMVQQAPSRGHTGAAPASRMAQQPVPLHQGVAPHQ 266


>Z95559-15|CAB63361.1|  917|Caenorhabditis elegans Hypothetical
           protein Y41E3.11 protein.
          Length = 917

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 335 APSVATALIMVGEPRRSHPSPAVVSAMDVRIIP 237
           +P+VA A+++ G  + S P P VV A      P
Sbjct: 706 SPTVAAAVVVAGNNQFSFPPPPVVMAAPASAAP 738


>Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical
           protein F16B12.6 protein.
          Length = 1392

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 311 IMVGEPRRSHPSPAVVSAMDVRIIPLHRSASSNRTPLFSDILVLE 177
           ++ G  RR  P P V   M+    P+   A+SN+TP F D L+ +
Sbjct: 103 MLKGAKRRKIP-PHVAEMMET---PVAHRANSNQTPKFDDQLMTD 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,077,333
Number of Sequences: 27780
Number of extensions: 153049
Number of successful extensions: 311
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)