Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0563
         (354 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   2.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   2.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   4.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    20   7.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   9.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   9.9  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 184 TRMSEKRGVRFEEAERCKGII 246
           T M  K G+RFEE     GI+
Sbjct: 51  TFMCHKYGLRFEEVSEKYGIL 71


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 191 ILVLEILFDLVHIFYT 144
           IL L +LF+ +HI Y+
Sbjct: 6   ILTLGVLFNTLHIIYS 21


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 17/69 (24%), Positives = 29/69 (42%)
 Frame = -2

Query: 329 SVATALIMVGEPRRSHPSPAVVSAMDVRIIPLHRSASSNRTPLFSDILVLEILFDLVHIF 150
           ++A  + M   PRR  P  A    +      LHR+A  + + L    L+  +  D+ +  
Sbjct: 100 TIAVCVCMRKCPRRHRPVCASNGKIYANHCELHRAACHSGSSLTKSRLMRCLHHDIENAH 159

Query: 149 YTRIL*TNK 123
             R L  N+
Sbjct: 160 IRRTLHMNR 168


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 179 EILFDLVHIFY 147
           EILFD VH+ +
Sbjct: 168 EILFDTVHVTF 178


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = +1

Query: 25  AKQLSSLSYL*RIQRVV 75
           A+ ++S+SY+ ++ R+V
Sbjct: 459 ARHINSVSYIDKVARIV 475


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 269 VVSAMDVRIIPLHRSASSNRTPLFSDIL 186
           V  A D R +  HR   S  +P F ++L
Sbjct: 34  VTLACDGRSLKAHRVVLSACSPYFRELL 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,863
Number of Sequences: 438
Number of extensions: 2208
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)