Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0563
         (354 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67160.1 68418.m08466 transferase family protein similar to a...    29   0.89 
At2g14910.1 68415.m01695 expressed protein                             28   2.1  
At2g28180.1 68415.m03422 cation/hydrogen exchanger, putative (CH...    27   3.6  
At3g45650.1 68416.m04931 proton-dependent oligopeptide transport...    26   6.3  
At2g39580.1 68415.m04855 expressed protein                             26   6.3  
At4g30000.1 68417.m04268 dihydropterin pyrophosphokinase, putati...    26   8.3  
At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP...    26   8.3  

>At5g67160.1 68418.m08466 transferase family protein similar to
           anthranilate N-hydroxycinnamoyl/benzoyltransferase,
           Dianthus caryophyllus [gi:2239091]; contains Pfam
           transferase family domain PF002458
          Length = 434

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 111 TSTLFICLENSGVKDMHQIK*NLKYQDVREERGSI 215
           T + FI  + SGV+ +H +  N++  DV E  GS+
Sbjct: 83  TVSFFISCDGSGVEFVHAVAKNIELSDVLELSGSV 117


>At2g14910.1 68415.m01695 expressed protein
          Length = 386

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 220 LQIEPLSSLTSWYLRFYLIWCI 155
           LQ +PL SLT  YL   L WC+
Sbjct: 333 LQFQPLISLTRDYLARLLFWCM 354


>At2g28180.1 68415.m03422 cation/hydrogen exchanger, putative (CHX8)
           monovalent cation:proton antiporter family 2 (CPA2)
           member, PMID:11500563
          Length = 847

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 272 AVVSAMDVRIIPLHRSASSNRTPLFSDILVLEIL 171
           A+  A+ + I+P HR+ S +RT + SD+  +  L
Sbjct: 626 ALDKAVTLIILPFHRTWSLDRTSIVSDVEAIRFL 659


>At3g45650.1 68416.m04931 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 558

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +2

Query: 119 IVYLSREFGCKRYAPDQIESQVPGC 193
           IVYL  EF  K  A  QI + V GC
Sbjct: 51  IVYLIEEFNVKSIAAAQIANIVSGC 75


>At2g39580.1 68415.m04855 expressed protein
          Length = 1567

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 190  MSEKRGVRFEEAERCKGIIL 249
            + E+RG+  EEA R KGI L
Sbjct: 1547 IEERRGIEIEEAARKKGITL 1566


>At4g30000.1 68417.m04268 dihydropterin pyrophosphokinase, putative
           / dihydropteroate synthase, putative / DHPS, putative
           similar to dihydropterin pyrophosphokinase
           /dihydropteroate synthase [Pisum sativum]
           gi|1934972|emb|CAA69903
          Length = 554

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = -2

Query: 335 APSVATALIMVGE---PRRSHPSPAVVSAMDVRIIPLHRSASSNRTPLFSDI 189
           AP ++  LI  G     R   P PAV+SA+    +  HR  SS    L S +
Sbjct: 2   APLLSQTLIHTGRFLLRRFLEPPPAVISAVAASRVCFHRYYSSKSLSLVSPL 53


>At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP2)
           identical to fatty acid multifunctional protein (AtMFP2)
           GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty
           acid beta-oxidation); contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 725

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = -2

Query: 323 ATALIMVGEPRRSHPSPAVVSAMDVRIIPLHRSASSNRTPLFSDILVLEILFDLVHIFYT 144
           A A  +   P   HP   +  A++V I+   R+       + S ++ L+    L+H+F++
Sbjct: 234 AKAQTLKRAPNMKHPLMCL-DAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFS 292

Query: 143 R 141
           +
Sbjct: 293 Q 293


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,702,164
Number of Sequences: 28952
Number of extensions: 143472
Number of successful extensions: 365
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)