Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0560
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    30   0.38 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   4.7  
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa...    25   8.3  

>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -3

Query: 352 NRPSPG**TL*D*TDV*TSASENQVSLGSKSARSSSVIWEIS*RTQDGTKIS 197
           N P PG  T+   ++V ++ SEN    GSKS  SSS++   +  T   T I+
Sbjct: 49  NGPVPGTTTIYPTSNVASNTSENYPYTGSKSLSSSSILSNSTISTSSSTPIT 100


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -1

Query: 288 KTKFPSAQKAQGAPQSSGKSHDEPKTAPKSAAEREIGKRTTRR 160
           ++K     K +  P+S  +SH E K+A K   +++  K  ++R
Sbjct: 594 ESKHKRDSKHEARPESKHESHRESKSAEKDKKDKKDKKEDSKR 636


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -1

Query: 291  LKTKFPSAQKAQ--GAPQSSGKSHDEPKTAPKSAAEREIGKRTT 166
            L+ K  +A++ Q    P++  K H EPK+A    AE   G   +
Sbjct: 1408 LRAKLKAAERLQKPAIPRTRRKGHTEPKSAKSLLAELTNGSNAS 1451


>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
           Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = +2

Query: 56  LIEIMFKNALQLPRIDN*VFSVTSMNKFKIPPYYFRRVVLLPISR 190
           L++  FKN ++  ++ N  F   +++   +PP + +   +L   R
Sbjct: 104 LLDDCFKNRIEYAKLQNYNFEFVNVSSLVVPPVWGKMPAILQTMR 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,092,637
Number of Sequences: 5004
Number of extensions: 64735
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)